PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g511390.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 616aa MW: 68254.4 Da PI: 6.1776

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g511390.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	36.2	1.6e-11	1	47	38	86
trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 mre+gf rsp++C++kw+nl k++kk +++ k + +s +++y+++l+ Pd.00g511390.m01 1 MREKGFDRSPTMCTDKWRNLLKEFKKARHQVKVG--SRSAKMSYYEDLQ 47 89****************************98..45568***997 PP

Sequence ? help Back to Top
Protein Sequence Length: 616 aa Download sequence
MREKGFDRSP TMCTDKWRNL LKEFKKARHQ VKVGSRSAKM SYYEDLQDLL RDRTNNNHNA 60 ASTDASAASA AAYKSPTPPK LESFVRFCDK GLEDSGIPFG PMEATDRSAL NLERQLDHDG 120 DPLAITAADT VAVSGVPPWN WREGPGNGGE GHSSYCGKII TVKLGEYTRR IGIDGTADAI 180 KEAIKSAFRI RTKRAFWLED EDQVVRSLDR DMPLGNYTLH LDEGITIKLC LYDDSDRIVR 240 TEEITLYTED DFRDFLARRG LMGLRELSGY RRIDTLDELQ SGAMYQGIGI FQMVLIWCYV 300 GEGFGRIGRL VARVALQRDD VELVAVNDPF INIEYMSYMF KYDSVHGQWK HHELKAKDDK 360 TLLFGDKPVR VFASREPEGI PWGEAGAEFV VESTGVFTDK EKASLHLKGG AKKVVISAPS 420 KDAPMFVVGV NEKDYTPDLN IVSNASCTTN CLAPLAKVVH DKFGIVEGLM TTVHSITATQ 480 KTVDGPSMKD WRGGRAAATN IIPSSTGAAK AVGKVLPALN GKLTGMAFRV PTVDVSVVDL 540 TVRLEKKATY DEIKDAIKKE SEGSMKGILG YTDEDVVSTD FVGDNRSSIF DAKAGIALND 600 NFVKLVSWYD NEWGYR

Sequence ? help Back to Top

Protein Sequence Length: 616 aa Download sequence

MREKGFDRSP TMCTDKWRNL LKEFKKARHQ VKVGSRSAKM SYYEDLQDLL RDRTNNNHNA  60
ASTDASAASA AAYKSPTPPK LESFVRFCDK GLEDSGIPFG PMEATDRSAL NLERQLDHDG  120
DPLAITAADT VAVSGVPPWN WREGPGNGGE GHSSYCGKII TVKLGEYTRR IGIDGTADAI  180
KEAIKSAFRI RTKRAFWLED EDQVVRSLDR DMPLGNYTLH LDEGITIKLC LYDDSDRIVR  240
TEEITLYTED DFRDFLARRG LMGLRELSGY RRIDTLDELQ SGAMYQGIGI FQMVLIWCYV  300
GEGFGRIGRL VARVALQRDD VELVAVNDPF INIEYMSYMF KYDSVHGQWK HHELKAKDDK  360
TLLFGDKPVR VFASREPEGI PWGEAGAEFV VESTGVFTDK EKASLHLKGG AKKVVISAPS  420
KDAPMFVVGV NEKDYTPDLN IVSNASCTTN CLAPLAKVVH DKFGIVEGLM TTVHSITATQ  480
KTVDGPSMKD WRGGRAAATN IIPSSTGAAK AVGKVLPALN GKLTGMAFRV PTVDVSVVDL  540
TVRLEKKATY DEIKDAIKKE SEGSMKGILG YTDEDVVSTD FVGDNRSSIF DAKAGIALND  600
NFVKLVSWYD NEWGYR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25990.1	1e-115	Trihelix family protein