PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g512230.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 214aa    MW: 23664.9 Da    PI: 8.7966
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g512230.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260141.13.6e-4463161199
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++e
  Pd.00g512230.m01  63 PCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVLPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKE 155
                       7******************************************************************************************** PP

            DUF260  94 lallke 99 
                       l+++++
  Pd.00g512230.m01 156 LDATNA 161
                       *99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MPQRKLLLVD GINGDIMVYS KSPATSWYNH RRDLERVFSH NGEKAQLVHW RMASSSSSYT  60
NSPCAACKFL RRKCMPDCIF APYFPPEEPQ KFANVHKIFG ASNVSKLLNE VLPHQREDAV  120
NSLAYEAEAR MKDPVYGCVG AISVLQRQVI RLQKELDATN ADLIRYAASS CNNLEIPIAS  180
QSGRTRTNSN TGHGGGSLGQ NPGLVLSPLL SQSE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.23e-72LBD family protein