PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g520280.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 238aa MW: 26357.3 Da PI: 9.674

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g520280.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57	4.5e-18	34	79	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v+++G+++W++I+r++ gR++k+c++rw + Pd.00g520280.m01 34 KGPWSAEEDRVLTRLVERYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 79 79***************************9.*********985 PP
2	Myb_DNA-binding	53.4	5.9e-17	88	130	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ Pd.00g520280.m01 88 PFSQAEDETILAAHARFGNR-WATIARLLP-GRTDNAVKNHWNST 130 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence
MEAMNRCSSS TSSSDTSSSE SSLPRNPNKP ERIKGPWSAE EDRVLTRLVE RYGPRNWSLI 60 SRYIKGRSGK SCRLRWCNQL SPNVEHRPFS QAEDETILAA HARFGNRWAT IARLLPGRTD 120 NAVKNHWNST LKRRVRGEHH HHHQIDGVNF VGGGGNVANN EGMSTSSVSG SLVNGSVEFD 180 PLTELTLAPP GISGAAMVSV QQRSESLPSG FWDTMRDVIA REVRDYVATT FSEPSGLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	2e-58	MYB family protein