PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g523350.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 176aa    MW: 19549.5 Da    PI: 10.2646
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g523350.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.81.8e-203379147
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                      krie+k +r+vtfskR++gi+ KA ELSvL +ae+a +++ss+gk++
  Pd.00g523350.m01 33 KRIEEKNKRHVTFSKRKKGIFNKAAELSVLSGAEIATMVVSSNGKVF 79
                      79******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    
MAKIKIPKSE IADNNNTSDG KKGSKGRRRI EIKRIEEKNK RHVTFSKRKK GIFNKAAELS  60
VLSGAEIATM VVSSNGKVFC LGTPNYDTVI NRYLGHHTAS LAAAGQPDHR ALLHGGCGYG  120
WWERPIPIGM MSSLEELEEY KAALYKLKHN VEVRTNQMIR GSAPSNYYSS LLVMGD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-14M-type_MADS family protein