PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g523530.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 798aa MW: 90960.5 Da PI: 10.1643

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g523530.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.8	7.1e-07	745	764	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 C+++a+ G C yG++CkF+H Pd.00g523530.m01 745 MCKYYAQ-GRCYYGNNCKFSH 764 6****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 798 aa Download sequence
MATAEQSKYH QYEEKDGDFL ENGESDPEYD SDDSMKDPSY SSTLEETHAN FSKLSIKRNS 60 KTRIAKDIDL GSEADLDGQE VVLPGLDQKD EKSFEMVQKI IEARQIEKLK VEQCKLYLRK 120 NGLRLTGNKD TLIQRIKEHL EILNGGGEKK YPASSFVLNC KGDACTSDVV MFEQNVYEIF 180 DIASRSGRGP PCGTRIVAGR IVKESYGAAK QQHTFTIEVL WSKGEKPLPP LHPLLIKGRN 240 LYRLKTLRQR WEDEGERQKV LMEKHTRGSL ARTAKEARVQ EKDMRKMLKR NRVSRKEEPK 300 KNQSQFNSTS VLKTSVQPQQ SGSLVNSANL HQLVGISVHS GNTKVCAQQL GLFTDLLRDP 360 SLKPATQIHQ SGFVVYSQNP ATQPPVPKSA RQIEKLKVEQ CKLYLRKNGL RLTGNKDTLI 420 QRIKEHLEIL NGGGEKKYPA SSFVLNCKGD ACTSDVVMFE QNVYEIFDIA SRSGRGPPCG 480 TRIVAGRIVK ESYGAAKQQH TFTIEVLWSK GEKPLPPLHP LLIKGRNLYR LKTLRQRWED 540 EGERQKVLME KHTRGSLART AKEARVQEKD MRKMLKRNRV SRKEEPKKNQ SQFNSTSVLK 600 TSVQPQQSGS LVNSANLHQL VGISVHSGNT KVCAQQLGLF TDLLRDPSLK PATQIHQSGF 660 VVYSQNPATQ PPVPKSGFFV DSRKVTIQPQ LTKNTTMQDR YFNQASQKLN ESRNSNNTER 720 VYNKRQPLTS VNHFLPTSPQ GQKQMCKYYA QGRCYYGNNC KFSHAMRGNY NERREERWPH 780 EQRNLCQQQI FLWNEREL

Sequence ? help Back to Top

Protein Sequence Length: 798 aa Download sequence

MATAEQSKYH QYEEKDGDFL ENGESDPEYD SDDSMKDPSY SSTLEETHAN FSKLSIKRNS  60
KTRIAKDIDL GSEADLDGQE VVLPGLDQKD EKSFEMVQKI IEARQIEKLK VEQCKLYLRK  120
NGLRLTGNKD TLIQRIKEHL EILNGGGEKK YPASSFVLNC KGDACTSDVV MFEQNVYEIF  180
DIASRSGRGP PCGTRIVAGR IVKESYGAAK QQHTFTIEVL WSKGEKPLPP LHPLLIKGRN  240
LYRLKTLRQR WEDEGERQKV LMEKHTRGSL ARTAKEARVQ EKDMRKMLKR NRVSRKEEPK  300
KNQSQFNSTS VLKTSVQPQQ SGSLVNSANL HQLVGISVHS GNTKVCAQQL GLFTDLLRDP  360
SLKPATQIHQ SGFVVYSQNP ATQPPVPKSA RQIEKLKVEQ CKLYLRKNGL RLTGNKDTLI  420
QRIKEHLEIL NGGGEKKYPA SSFVLNCKGD ACTSDVVMFE QNVYEIFDIA SRSGRGPPCG  480
TRIVAGRIVK ESYGAAKQQH TFTIEVLWSK GEKPLPPLHP LLIKGRNLYR LKTLRQRWED  540
EGERQKVLME KHTRGSLART AKEARVQEKD MRKMLKRNRV SRKEEPKKNQ SQFNSTSVLK  600
TSVQPQQSGS LVNSANLHQL VGISVHSGNT KVCAQQLGLF TDLLRDPSLK PATQIHQSGF  660
VVYSQNPATQ PPVPKSGFFV DSRKVTIQPQ LTKNTTMQDR YFNQASQKLN ESRNSNNTER  720
VYNKRQPLTS VNHFLPTSPQ GQKQMCKYYA QGRCYYGNNC KFSHAMRGNY NERREERWPH  780
EQRNLCQQQI FLWNEREL