PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g530050.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 191aa    MW: 21630.9 Da    PI: 3.8797
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g530050.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.25.7e-101354950
                      HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      +++  skR  ++  KA  LS LCd+ v +i ++++g++ +++
  Pd.00g530050.m01 13 QKTAVSKRGSTLKNKAGRLSNLCDIAVYMIAVGPDGEINDWP 54
                      56889************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    
MKMKRVSDAM KPQKTAVSKR GSTLKNKAGR LSNLCDIAVY MIAVGPDGEI NDWPENQQDL  60
KSVQESEEGR TTRAAAAAIG LMEDDMQFCD NLDDYEPTVD TIYDFLSWVL GDEDQNDNSA  120
MEDDVQPQST NHITDDEHDD IRLLLTDCEI GLMQEDLQFL DNDFSEFLAP LETMLLQDPQ  180
HQPHSELNLN F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41200.17e-08M-type_MADS family protein