PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g530090.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 105aa    MW: 12023.1 Da    PI: 10.4805
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g530090.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.35.2e-10654350
                      --SHHHHHHH.HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  3 ienksnrqvt.fskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      +++ ++ q t  ++R  ++  KA  LS LCd+ v +i ++ +gk+ +++
  Pd.00g530090.m01  6 VSDAMKPQKTaMARRGSTLKNKAGRLSMLCDIAVYMIAVGADGKINDWP 54
                      555555554505555566666***************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    
MKMKRVSDAM KPQKTAMARR GSTLKNKAGR LSMLCDIAVY MIAVGADGKI NDWPENQQDL  60
KSVVLKYKNL KRGFKDRIEK GLFSVEKGFL EIVDDRENRD LVSWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.12e-09M-type_MADS family protein