PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g530090.m02
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 392aa    MW: 44164.6 Da    PI: 3.9381
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g530090.m02genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF275.8e-09754450
                      -SHHHHH.HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  4 enksnrq.vtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      ++ ++ q +  ++R  ++  KA  LS LCd+ v +i ++ +gk+ +++
  Pd.00g530090.m02  7 SDAMKPQkTAMARRGSTLKNKAGRLSMLCDIAVYMIAVGADGKINDWP 54
                      55555550445555566666***************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    
MKMKRVSDAM KPQKTAMARR GSTLKNKAGR LSMLCDIAVY MIAVGADGKI NDWPENQQDL  60
KSVVLKYKNL KRGFKDRIEK GLFSVEKGFL EIVDDRENRD LGIQDNCLGA NFMDLNKNIM  120
EPDAADQQQL SSLNLNLNLH PTDLVVPTPK PNLIGEINLN LDPGDLVIPT PKPNLIGQIN  180
LNLDPGNVVI PTPKPNLIGQ FQQDYLSSIH EPTVDANDYL SLVLGNDDHN DIGLMEDYLQ  240
LYDLELPEEP QEQLQPQSPS LPSVEISDDD MKLLLSDCEI GLMEDDMQFC DNLDDYEPTV  300
DTIYDFLSCV LGGEDENDNS AMEDDVQPQS TNHITDDEHD DIRLLLTDCE IGLMQEDLQF  360
CDNDLSDFLV PLETMLLQDP QHQHHSELNL NF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.12e-08M-type_MADS family protein