PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g536370.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 361aa    MW: 39311.2 Da    PI: 8.6854
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g536370.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.6e-05125147223
                       EETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                       +Cp Cg+ F   +nL+ H+ + H
  Pd.00g536370.m01 125 SCPECGEIFMKAENLELHQAVrH 147
                       8******************9888 PP
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    
MEESNAAKKS KKMRCSGSLC NNTKIMHRPE IGSPEVHKKR ASMGSSNSNE TSSRSMKAPL  60
HELNGVVSTS SSSLSAVSTN ISSVGAGSFR AMPFRRFSGC YECRMVVDPV LGFARDPSLR  120
GSICSCPECG EIFMKAENLE LHQAVRHAVS ELGPEDTSKN IVEIIFQSSW LKKQTPICKI  180
DRILKVHNTQ KTISKFEEYR ESIKAKATKL PKKHPRCIAD GNELLRFHST TFVCSLGLNG  240
SSNLCNSIPH CNICSIIKNG FDKFSGDLIE DGILTTATSG RAHDKAVVAA EDSGKRAMLV  300
CRVIAGRVKK NMEDSIGIGP IGMEEYDSVA GAVGVYSNLD ELYVFNPKAI LPCFVVIYGG  360
F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-104C2H2 family protein