PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g538760.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 260aa    MW: 28306.4 Da    PI: 6.3038
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g538760.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000531521891254
                       HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       R +++ ++++ L++l+ +      +K + a++L +A+ YI+ L
  Pd.00g538760.m01 152 RKEKLGERIAALQQLVSPF-----GKTDTASVLHEAMGYIRFL 189
                       77788899********998.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MAENDGLEGD HLAVTEGTSF SQLLFAADEV CGLGVDDETF DYTHSSAYST QIKPPKMLCF  60
GNYDHSHGDG LEIGFSETAK KSGVTCSDSS SVYSTSNTSI NALPKSNNKR RNGLGQESVQ  120
CASTISTTMI ASQRTSKKTK SENHTSTGNA KRKEKLGERI AALQQLVSPF GKTDTASVLH  180
EAMGYIRFLH DQVQVLCSPY LQRLPTLPDG EMEEARKDLR SRGLCLAPVE YTMHVTNNNG  240
ADFWSPAMAN NNNNVSSTKY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.11e-46bHLH family protein