PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g551210.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family AP2
Protein Properties Length: 196aa    MW: 22747.5 Da    PI: 10.5434
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g551210.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55.3e-1651110155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  s+n+   k+ ++++lg ++++e Aa  ++ a++k++g
  Pd.00g551210.m01  51 SIYRGVTRHRWTGRFEAHLWDkSSWNNiqnKKgRQVYLGAYDSEEAAAHTYDLAALKYWG 110
                       57*******************777799977447*************************98 PP
2AP229.22.3e-09153186137
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfg 37 
                       s+y+GV +++ +grW+A+I   +   g +k+ +lg++ 
  Pd.00g551210.m01 153 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYK 186
                       89****99**********99966...3.6********7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MVLLPWPETP HLNQAENQKP KAKRIRKNQN NPTEKCQNGT NPNTGGGRRS SIYRGVTRHR  60
WTGRFEAHLW DKSSWNNIQN KKGRQVYLGA YDSEEAAAHT YDLAALKYWG PGTTLNFPIE  120
TYTKELEEMQ KASREEYLAS LRRRSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL  180
YLGTYKLDAA NFQLLY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-82AP2 family protein