PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g552270.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Whirly

Protein Properties

Length: 236aa MW: 25640.6 Da PI: 10.4146

Description

Whirly family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g552270.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Whirly	200.7	1.9e-62	55	190	2	137
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkal 94 ++k+kaal++++v+ptf++l+sgnl+++r+G+++l++++a++erkydWek q+falsatev++l++l++k+sce+fhdp++k+sn+G+vrk+l Pd.00g552270.m01 55 IFKGKAALSLNPVLPTFTKLESGNLVVSRRGAVMLKFTPAIGERKYDWEKNQVFALSATEVGSLISLGPKDSCELFHDPSMKSSNAGQVRKSL 147 9****************************************************************************************** PP Whirly 95 kvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137 +++ ++dGsG++v+l+v n+l+k++e+f vPv+ aefav++++ Pd.00g552270.m01 148 SIKCHADGSGYLVSLTVMNNLLKTKENFIVPVTAAEFAVMKTA 190 ***************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence
MMKVLRLLSS SRNQFPTRGA LSMHAYTHST SFSTASKSFS VKGTSAHNVF ASFNIFKGKA 60 ALSLNPVLPT FTKLESGNLV VSRRGAVMLK FTPAIGERKY DWEKNQVFAL SATEVGSLIS 120 LGPKDSCELF HDPSMKSSNA GQVRKSLSIK CHADGSGYLV SLTVMNNLLK TKENFIVPVT 180 AAEFAVMKTA CSFALPHIMG WDRLMSNMPS GVGGQQSNVG GQQSKVVPQL LDEWDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71260.1	3e-86	Whirly family protein