PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g558500.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

HB-PHD

Protein Properties

Length: 1011aa MW: 110632 Da PI: 4.5018

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g558500.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	40.1	6.4e-13	846	889	9	52
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + +++L + F++n+yp+++++e LA++lgL +qV+ WF N R Pd.00g558500.m01 846 EAVTQRLCKSFKENHYPDRSMKESLARELGLMAKQVSKWFENAR 889 667899************************************99 PP
2	PHD	38.2	3.2e-13	467	522	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ +++++lCdg C++ fH+ Cl+++l se++p + wlC+ C++k Pd.00g558500.m01 467 FCAKCGSkdVSLDNDIILCDGaCDRGFHQFCLEPPLLSEDIPPDdeGWLCPGCDCK 522 699*964444****66***************99999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1011 aa Download sequence
MADAAQLEIP PECVSSQTAK CQEESTSGQI HEIGSESQCS EKTKENIGCK VVQNELLEIC 60 KASNNPDEQS QSFSENLTEN SHVENLGLPA EDVNKSSQSG AQNVTKNSLT EQLEMPHEDP 120 DVNNQTDKTS CSGQMSLEQT NDSGFGTSSS EPAEEKHPSG SFCVQNELLQ TIMPLPICSG 180 SEQLQPISEN ANMASLNDQA GLPPEDVSKT CQTEKISCSH QITLQQINEF GSGSVPSEPA 240 KQKDQLDSVP AQNDEVKTSK AVSSSIVFEQ PGPSIEAMAE DSPIGHSEPP LEDASKSLSD 300 KEMELLPEDV TQNSSLQRSE TPSKNALKIS SCLGPKDKKN PKSRKRKYMS RSFVRSDRIL 360 RSRTGEKEKP KDFKLSNNVA TLESSNSIAN VSYEKSLIDA YSGEGWKGSS LEKLKPEKEL 420 QRATSEILRR KLKIRDLFQR LESLCAEGMF PESLFDSEGQ IDSEDIFCAK CGSKDVSLDN 480 DIILCDGACD RGFHQFCLEP PLLSEDIPPD DEGWLCPGCD CKVDCIDLLN DSQGTDLSVT 540 DSWEKVFPEA AAAASAGENH DNHGLPSDDS DDNDYDPDGP ETDDKVEGEE SSSDESEYAS 600 ASDGLETPKS NDEQYLGLPS EDSEDDDYNP YAPDVNEDVK QESSSSDFTS DSEDLGPALD 660 DNIMSSEDVE GPKSTSLDDS KPYGGSGERS SRRGQKKHSL KDELISLLES GPGQGESAPL 720 SGKRHIERLD YKRLHDEAYG NVPTDSSDDE DWNDIAMQRK RKKGTGQVAN RSPNGKTSNI 780 KNGVITKDIK PDVDENENTP RRTPHRKSNV EDTSNLSNKY PKGSTKSGST SGRAGSSRST 840 YSRLGEAVTQ RLCKSFKENH YPDRSMKESL ARELGLMAKQ VSKWFENARH CLKVGVDKSA 900 SENCAPSPQT NRKQLEQGDA GVGDSDHSGA QNKELHRTDD PMIGCCSRDV KDSELATPGS 960 SRSKLSTPNN RKRKRRSDDP DPKTETPTPP AEPETNRKPS RVMTRRRKSV S

Sequence ? help Back to Top

Protein Sequence Length: 1011 aa Download sequence

MADAAQLEIP PECVSSQTAK CQEESTSGQI HEIGSESQCS EKTKENIGCK VVQNELLEIC  60
KASNNPDEQS QSFSENLTEN SHVENLGLPA EDVNKSSQSG AQNVTKNSLT EQLEMPHEDP  120
DVNNQTDKTS CSGQMSLEQT NDSGFGTSSS EPAEEKHPSG SFCVQNELLQ TIMPLPICSG  180
SEQLQPISEN ANMASLNDQA GLPPEDVSKT CQTEKISCSH QITLQQINEF GSGSVPSEPA  240
KQKDQLDSVP AQNDEVKTSK AVSSSIVFEQ PGPSIEAMAE DSPIGHSEPP LEDASKSLSD  300
KEMELLPEDV TQNSSLQRSE TPSKNALKIS SCLGPKDKKN PKSRKRKYMS RSFVRSDRIL  360
RSRTGEKEKP KDFKLSNNVA TLESSNSIAN VSYEKSLIDA YSGEGWKGSS LEKLKPEKEL  420
QRATSEILRR KLKIRDLFQR LESLCAEGMF PESLFDSEGQ IDSEDIFCAK CGSKDVSLDN  480
DIILCDGACD RGFHQFCLEP PLLSEDIPPD DEGWLCPGCD CKVDCIDLLN DSQGTDLSVT  540
DSWEKVFPEA AAAASAGENH DNHGLPSDDS DDNDYDPDGP ETDDKVEGEE SSSDESEYAS  600
ASDGLETPKS NDEQYLGLPS EDSEDDDYNP YAPDVNEDVK QESSSSDFTS DSEDLGPALD  660
DNIMSSEDVE GPKSTSLDDS KPYGGSGERS SRRGQKKHSL KDELISLLES GPGQGESAPL  720
SGKRHIERLD YKRLHDEAYG NVPTDSSDDE DWNDIAMQRK RKKGTGQVAN RSPNGKTSNI  780
KNGVITKDIK PDVDENENTP RRTPHRKSNV EDTSNLSNKY PKGSTKSGST SGRAGSSRST  840
YSRLGEAVTQ RLCKSFKENH YPDRSMKESL ARELGLMAKQ VSKWFENARH CLKVGVDKSA  900
SENCAPSPQT NRKQLEQGDA GVGDSDHSGA QNKELHRTDD PMIGCCSRDV KDSELATPGS  960
SRSKLSTPNN RKRKRRSDDP DPKTETPTPP AEPETNRKPS RVMTRRRKSV S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	344	371	RKRKYMSRSFVRSDRILRSRTGEKEKPK
2	759	763	RKRKK
3	971	976	RKRKRR
4	1004	1009	TRRRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	8e-88	HB-PHD family protein