PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g563600.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 254aa    MW: 28408.5 Da    PI: 7.0179
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g563600.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.11.1e-1337741350
                      HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      +++R  ++ KKA+ELS+LCd+ v+v+ ++ + ++ +++
  Pd.00g563600.m01 37 LARRMSTLKKKASELSTLCDVAVCVVSVGANREIETWP 74
                      67899********************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MAPPQLKSKK PKKMKIKMKP QVLKIDANCG SVLKPALARR MSTLKKKASE LSTLCDVAVC  60
VVSVGANREI ETWPENQQEA KSILLKHKNL GKLGKKIEKG SFSARKGTDY SFLETMLEAL  120
NERIGVVMMR DGVGTKTRTT STCSFMEFYE NIMGTSVPPD QQQSMLLVDQ VPHHQQEDYS  180
TTNSDGFFLD DLHIAAASPT MSSIDDYVSW LLEDHNDVGL MKDYIQFCDS DLASPQDPQQ  240
QQQPSSLQLP QTNY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.13e-11M-type_MADS family protein