PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g573020.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 247aa    MW: 28102.9 Da    PI: 9.2992
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g573020.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.0001595117223
                       EETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                       +C+ C+++++++ +L  H++  H
  Pd.00g573020.m01  95 SCSVCSRVYPTSRLLSIHLSEaH 117
                       6******************9888 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MASMDVEGPQ LGFPHWKPLR RRFGPESPFF ASGNIERELL AKQLALDLTE HERHQLRNMV  60
DEEGRGVFCT IVGCGARLSS LEDFEDHYNA RHTASCSVCS RVYPTSRLLS IHLSEAHDSF  120
FQAKVARGYP MYECLVEGCD LKFKNYKSRQ QHLVDKHKFP TSFEFFKKAQ PSKKQRQKNQ  180
RKQAIPKKAD ASCMEVENET IDCLVSAVSK LSTSDSSPSS ISFGRRPTRG LTFVPRAVQR  240
EKKPDST
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173179KKQRQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-104C2H2 family protein