PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g582940.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 915aa MW: 100642 Da PI: 4.9897

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g582940.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.1	1e-05	531	552	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + Cr+f r G C+ Gd+CkF+H+ Pd.00g582940.m01 531 AYCRHFVR-GRCHEGDKCKFSHD 552 67****.***********7 PP
2	zf-CCCH	24.6	4.3e-08	586	606	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++f ++G+C++GdrC F+H Pd.00g582940.m01 586 PCNNFKENGFCSRGDRCMFSH 606 7******************** PP

Sequence ? help Back to Top
Protein Sequence Length: 915 aa Download sequence
MEEANVETEK PSQTLIAFPP HCRRHLKSGT YRTLVRILSH CYDESQHSAA DQNVPQELNH 60 DNGSIEPVQA TEKEVLGNVE LDGPGSMGPK NSAAEEVGVA DESCNPNDFQ EQLEQIKSIL 120 NVEENEDFSK LNEVMDIENI LAIDYQDLDF DPAQILMDEP ERMAKGNEDD THRPSASLDQ 180 NQSGSDKAAL LTNQEEHDAT VISESSGQMV SGTLDSSLHT VAMGESSNQR ESNEQNSLLM 240 TNRLDVEPIM QQKAMELETY VSSEGAKESC IPITEVGAIK EPENFSQKVP DSFDFSLNKD 300 MVAEASKPTE YSKDKSSSRE NNDLEVEHEM QQKDKEMEEM EEMVCTRTAI NSPSHISEDI 360 EEGEISSDDG MDDRSNDVLL HDTVVLEEKK VPEVQIFKDV LDRKEHSCKV ANDKDFGSNS 420 FLVDMVDEGK IDRGAELRES IRTEMICRPG VVEGKSVKAL NVDESNPLLE GGRIEMQDNG 480 VRMGNGCPAA GNHGITSEEM AKERKKRAEK NRELGVKRLK LHPIQKAKTV AYCRHFVRGR 540 CHEGDKCKFS HDTVPLTKSK PCVHFARQSC MKGDDCQYDH ELSKYPCNNF KENGFCSRGD 600 RCMFSHKMPS NEDSATAACK PELKPPMVLN NSRSQQVNTG GASQQNVHAL AYSTGIHSRN 660 NTKQNVTQTV LKQPEPANKG ISFPSILKSS LVHSSMSKQE GLAPDRNNGA KAGNQIDQSP 720 LSSVQNSIEI LKRTPPVTTP KGINFLSFGK ASPDDARGKN QVSRQTSPSV SETVKNLNGM 780 LKANQSAALQ GTHFNPFGKS SVASSSSEKP VSLPSFWNNG SNIDSCGSQT TADKSQNSSG 840 ISLRLPPSPL TSGQSSDRIA SRFCKDTANS FQRGLFSTLA FAAKYKTQNM NQSIGSTGAQ 900 VDNETRNSSI SDRIE

Sequence ? help Back to Top

Protein Sequence Length: 915 aa Download sequence

MEEANVETEK PSQTLIAFPP HCRRHLKSGT YRTLVRILSH CYDESQHSAA DQNVPQELNH  60
DNGSIEPVQA TEKEVLGNVE LDGPGSMGPK NSAAEEVGVA DESCNPNDFQ EQLEQIKSIL  120
NVEENEDFSK LNEVMDIENI LAIDYQDLDF DPAQILMDEP ERMAKGNEDD THRPSASLDQ  180
NQSGSDKAAL LTNQEEHDAT VISESSGQMV SGTLDSSLHT VAMGESSNQR ESNEQNSLLM  240
TNRLDVEPIM QQKAMELETY VSSEGAKESC IPITEVGAIK EPENFSQKVP DSFDFSLNKD  300
MVAEASKPTE YSKDKSSSRE NNDLEVEHEM QQKDKEMEEM EEMVCTRTAI NSPSHISEDI  360
EEGEISSDDG MDDRSNDVLL HDTVVLEEKK VPEVQIFKDV LDRKEHSCKV ANDKDFGSNS  420
FLVDMVDEGK IDRGAELRES IRTEMICRPG VVEGKSVKAL NVDESNPLLE GGRIEMQDNG  480
VRMGNGCPAA GNHGITSEEM AKERKKRAEK NRELGVKRLK LHPIQKAKTV AYCRHFVRGR  540
CHEGDKCKFS HDTVPLTKSK PCVHFARQSC MKGDDCQYDH ELSKYPCNNF KENGFCSRGD  600
RCMFSHKMPS NEDSATAACK PELKPPMVLN NSRSQQVNTG GASQQNVHAL AYSTGIHSRN  660
NTKQNVTQTV LKQPEPANKG ISFPSILKSS LVHSSMSKQE GLAPDRNNGA KAGNQIDQSP  720
LSSVQNSIEI LKRTPPVTTP KGINFLSFGK ASPDDARGKN QVSRQTSPSV SETVKNLNGM  780
LKANQSAALQ GTHFNPFGKS SVASSSSEKP VSLPSFWNNG SNIDSCGSQT TADKSQNSSG  840
ISLRLPPSPL TSGQSSDRIA SRFCKDTANS FQRGLFSTLA FAAKYKTQNM NQSIGSTGAQ  900
VDNETRNSSI SDRIE