PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g583130.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 583aa MW: 64642.5 Da PI: 7.295

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g583130.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.8	1.4e-06	314	336	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC f +G C++G++C+F H+ Pd.00g583130.m01 314 RLCFKFVSSGSCPRGENCNFQHD 336 566667778*************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 583 aa Download sequence
MAPPKILLCG DVLGHLKQLF KRVASVNKSA GPFDALFCVG QFFPDSADQL DEFNDYIEGR 60 AQIPLPTYFI GDYGVAATKV LLAATKDSGN QGFKLDGLKI CNNLYWLKGS GKFKLHGLSV 120 AYLSGLQCSD SQQFGTYSQD DVDVLRAVAE EPGIIDLFLT NKWPSGITNR AAASDVPPGA 180 SEPFGSDSTV AELVAEIKPR YHIAGTKGVY YAREPYSNVD AVHVTRFLGL APVGNKDKQK 240 FIHAISPTPA STMSTVEIST KSPTTTLSPY TYGEKTDHAT EAGKRSSDSI SDSQYWRYDV 300 NQKRQKHGAG DGNRLCFKFV SSGSCPRGEN CNFQHDVDAR EQSLRGVCFD FMNKGKCERG 360 PDCKFKHSLQ SEGESNSHQR RGSGNANSNR STECWFCLSS PKVESHLIIS IGEHYYCALA 420 KECEIELGKF QDALKQYYKK EGKDVVFFEW ASKRTTHANL QAVPVPSAKS AAVQNIFNLA 480 AEKLSFKFET MKSGNNSDGR KMLRTQFDRN FSFFYVQLPD GTILSHSIEE NERFLPQFGR 540 EVIAGLLNKA DRADWRNCTD SKEEEAKMAG DFKSGFEEFD PNK

Sequence ? help Back to Top

Protein Sequence Length: 583 aa Download sequence

MAPPKILLCG DVLGHLKQLF KRVASVNKSA GPFDALFCVG QFFPDSADQL DEFNDYIEGR  60
AQIPLPTYFI GDYGVAATKV LLAATKDSGN QGFKLDGLKI CNNLYWLKGS GKFKLHGLSV  120
AYLSGLQCSD SQQFGTYSQD DVDVLRAVAE EPGIIDLFLT NKWPSGITNR AAASDVPPGA  180
SEPFGSDSTV AELVAEIKPR YHIAGTKGVY YAREPYSNVD AVHVTRFLGL APVGNKDKQK  240
FIHAISPTPA STMSTVEIST KSPTTTLSPY TYGEKTDHAT EAGKRSSDSI SDSQYWRYDV  300
NQKRQKHGAG DGNRLCFKFV SSGSCPRGEN CNFQHDVDAR EQSLRGVCFD FMNKGKCERG  360
PDCKFKHSLQ SEGESNSHQR RGSGNANSNR STECWFCLSS PKVESHLIIS IGEHYYCALA  420
KECEIELGKF QDALKQYYKK EGKDVVFFEW ASKRTTHANL QAVPVPSAKS AAVQNIFNLA  480
AEKLSFKFET MKSGNNSDGR KMLRTQFDRN FSFFYVQLPD GTILSHSIEE NERFLPQFGR  540
EVIAGLLNKA DRADWRNCTD SKEEEAKMAG DFKSGFEEFD PNK