PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g587020.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 305aa MW: 33484.5 Da PI: 9.4867

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g587020.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00074	125	147	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++Fs+ L H +H Pd.00g587020.m01 125 YQCKTCDRCFSSFQALGGHRASH 147 9***********99999998887 PP
2	zf-C2H2	12.6	0.00042	212	234	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F++ L H+r+H Pd.00g587020.m01 212 HECSVCGAEFTSGQALGGHMRRH 234 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence
MHKFCGTHRL ANQFSSSTER NRWKKVMGKR TKRQRLASPL AHASTATASS SSSAGHDHQH 60 QVLVGPTETS PATSADQFTE ISTEEEEDMA NCLILLAQGN STPKTQHPIL VHNNKASASA 120 GLYVYQCKTC DRCFSSFQAL GGHRASHKKP NKANMNITQD NKKALSFVEE AEEYDRFNNT 180 STTLSLQISN RDYRASSSAA TPVINSKANK VHECSVCGAE FTSGQALGGH MRRHRTFMNT 240 TTTATAAAMS SPQPQSGSKR PRSILQLDLN LPAPEEERLE TKFPFVPKKE QVIVFSTSPL 300 VGCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	3e-54	C2H2 family protein