PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g587570.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 233aa    MW: 25937.6 Da    PI: 9.8942
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g587570.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.22.2e-23123216179
          trihelix   1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessst 78 
                       +Wt+ +v++Li a+ +++++ +++               +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+t ++++++
  Pd.00g587570.m01 123 KWTDTMVRLLIMAVFYIGDEGGSEGtdptgkkksvggllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTaCRVVEN 215
                       7**************999999965346677788999999*********************************************953777666 PP

          trihelix  79 c 79 
                        
  Pd.00g587570.m01 216 Q 216
                       5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MGSFPLSTAQ TKPAKLKPVA LLSVYSIYRF SFESLSHNTI HQQKQSSLLL FTSFFYAYVV  60
LLLHISAKAE KVFLIGAASG YGYPFATKSK QIALSDDDEP GFGADDNSNG DNKRKISPWQ  120
RMKWTDTMVR LLIMAVFYIG DEGGSEGTDP TGKKKSVGGL LQKKGKWKSV SRAMMEKGFY  180
VSPQQCEDKF NDLNKRYKRV NDILGKGTAC RVVENQGLLE KNGFVTEDEG RSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-53Trihelix family protein