PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g587770.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 298aa    MW: 32524.6 Da    PI: 4.698
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g587770.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.3e-05271294123
                       EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                       + C+ C++sF++   L++H +  H
  Pd.00g587770.m01 271 FNCQSCNRSFNSDGALQSHTKAkH 294
                       78*****************99877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    
MEFWGVEVKS GQSVSVEPKN KVVHLSQVCL DDVKKAKGSN PISLFVKTGN HKLVLGILSA  60
EKFPQLPLDI FFGEKFELSH NWKNGSVHFI GYKSLPKYPF CDNSDSEEDV ALTVVDNGKP  120
VISGKPNVST EDAKKAIKSE QKETSSDDDE SDDEEVGADQ TKVKIEEGSS EDEDESDDDD  180
DDDADSEDET DDSEEEDEET PKKADVSKKR PAESAKRLAN NKKAKFVTPE KTDSKKGSVH  240
IATPYPAKQA VKKPATSDQA KQQAPKSGGA FNCQSCNRSF NSDGALQSHT KAKHSAAK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.24e-28C2H2 family protein