PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g587960.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 539aa MW: 61277.3 Da PI: 6.9813

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g587960.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.9	1.6e-29	126	211	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea Pd.00g587960.m01 126 RWPRQETLTLLEIRSRLDFKFKEANQKGPLWDEVSRIMcEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKNYRFFRQLEA 211 8*********************************998***************************97..66678*****85 PP

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence
MEDQYNMSDL RQLMNGGGNR AHFPSIPLQA ATELFPSHRV PPLTAPPAHH HQQHHHYEQL 60 MMMGRPQPHD HHIINPRGLH HHEFRSPDSA AGGGAAANSA TVTASLSGGG GLMEAEAGGD 120 IGGSGRWPRQ ETLTLLEIRS RLDFKFKEAN QKGPLWDEVS RIMCEEHGYQ RSGKKCREKF 180 ENLYKYYKKT KEGKAGRQDG KNYRFFRQLE ALYGETTNSV VSTSLPEAHF IGNNSNNNNL 240 RYQTTINAQA NQEITTPYHH STDQKHCDSL SLSNSSEFDT SSSEDQENND VSAAAMDDDS 300 PDIKTMRKRR GGRGWKVKIK EFIDAQMRKL MEKQEEWLER LMRTLEQKER ERMVREEEWR 360 KQEVERVEKE HKFWAKERAW IEARDKALME ALHKLTGGSS STDQAKANYS SPSPDHDQHH 420 HHHHHHQTSS DHDQIVHNTS SARELLNKKR KENVNSKSSA CYFQNNESCS SLYSSQGGYC 480 AEMNDHEQGG NNDGSNNSPC GNANVGNAVQ DNCFPFLMSE GENLWENYGL KLSKGSQNQ

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence

MEDQYNMSDL RQLMNGGGNR AHFPSIPLQA ATELFPSHRV PPLTAPPAHH HQQHHHYEQL  60
MMMGRPQPHD HHIINPRGLH HHEFRSPDSA AGGGAAANSA TVTASLSGGG GLMEAEAGGD  120
IGGSGRWPRQ ETLTLLEIRS RLDFKFKEAN QKGPLWDEVS RIMCEEHGYQ RSGKKCREKF  180
ENLYKYYKKT KEGKAGRQDG KNYRFFRQLE ALYGETTNSV VSTSLPEAHF IGNNSNNNNL  240
RYQTTINAQA NQEITTPYHH STDQKHCDSL SLSNSSEFDT SSSEDQENND VSAAAMDDDS  300
PDIKTMRKRR GGRGWKVKIK EFIDAQMRKL MEKQEEWLER LMRTLEQKER ERMVREEEWR  360
KQEVERVEKE HKFWAKERAW IEARDKALME ALHKLTGGSS STDQAKANYS SPSPDHDQHH  420
HHHHHHQTSS DHDQIVHNTS SARELLNKKR KENVNSKSSA CYFQNNESCS SLYSSQGGYC  480
AEMNDHEQGG NNDGSNNSPC GNANVGNAVQ DNCFPFLMSE GENLWENYGL KLSKGSQNQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10000.1	1e-78	Trihelix family protein