PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g591960.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 406aa MW: 46877.8 Da PI: 7.8961

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g591960.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0012	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++Cg + s ks+ ++Hi +H Pd.00g591960.m01 56 YYCEYCGICRSKKSLITSHILSH 78 89*******************96 PP
2	zf-C2H2	20	1.9e-06	101	122	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg +F+ + +Lk+H+++H Pd.00g591960.m01 101 TCQECGVTFRKPAHLKQHMQSH 122 6*******************99 PP
3	zf-C2H2	15.9	3.8e-05	128	152	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y C+ dC+ s++rk++L+rH+ H Pd.00g591960.m01 128 YICSvdDCHSSYRRKDHLNRHLLQH 152 89*******************9887 PP
4	zf-C2H2	13.6	0.0002	157	182	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +C++ F + n++rH + H Pd.00g591960.m01 157 FKCPieNCNREFGFQGNMTRHVNElH 182 89*******************99888 PP
5	zf-C2H2	15.4	5.2e-05	197	221	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cgk+F+ s L++H +H Pd.00g591960.m01 197 HVCKeiGCGKVFRFASRLRKHEDSH 221 79*******************9888 PP
6	zf-C2H2	15.4	5.4e-05	288	312	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC C+ +F++ksnL +H + H Pd.00g591960.m01 288 KCDykGCHHTFTTKSNLAKHVKAvH 312 788889**************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MKTLDSLRCP SETSGSQSPN AVACSLVGET FRVGALAMDK GQAEMEGPIF RDIRRYYCEY 60 CGICRSKKSL ITSHILSHHK DEMEMSNVDE DREVEQEKSN TCQECGVTFR KPAHLKQHMQ 120 SHSLERPYIC SVDDCHSSYR RKDHLNRHLL QHQGKLFKCP IENCNREFGF QGNMTRHVNE 180 LHSEDSPSTN GGAQKQHVCK EIGCGKVFRF ASRLRKHEDS HVKLDTVEAF CSEPGCMKHF 240 TNEQCLQAHI HSCHQHTTCE ICGSKQLRNN IKRHLLTHED KHSIERMKCD YKGCHHTFTT 300 KSNLAKHVKA VHLEHKPFVC SFSGCGLRFA YKHVRDNHEK TGCHVYTQGD FEEADEQFRL 360 RPRGGRKREC PDIPMLVRKR VTPPNQLGQE SEYMSWLHSQ EDNDEQ

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MKTLDSLRCP SETSGSQSPN AVACSLVGET FRVGALAMDK GQAEMEGPIF RDIRRYYCEY  60
CGICRSKKSL ITSHILSHHK DEMEMSNVDE DREVEQEKSN TCQECGVTFR KPAHLKQHMQ  120
SHSLERPYIC SVDDCHSSYR RKDHLNRHLL QHQGKLFKCP IENCNREFGF QGNMTRHVNE  180
LHSEDSPSTN GGAQKQHVCK EIGCGKVFRF ASRLRKHEDS HVKLDTVEAF CSEPGCMKHF  240
TNEQCLQAHI HSCHQHTTCE ICGSKQLRNN IKRHLLTHED KHSIERMKCD YKGCHHTFTT  300
KSNLAKHVKA VHLEHKPFVC SFSGCGLRFA YKHVRDNHEK TGCHVYTQGD FEEADEQFRL  360
RPRGGRKREC PDIPMLVRKR VTPPNQLGQE SEYMSWLHSQ EDNDEQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-150	C2H2 family protein