PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g592210.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 209aa    MW: 24467.4 Da    PI: 9.3469
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g592210.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.62.8e-124391350
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEEE CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyeys 50
                      i+ + nr vtf kR++ ++ K  E+ +LC++ ++ +++  s+ k+  ++
  Pd.00g592210.m01 43 ISHEPNRRVTFKKRKANLFRKLTEITTLCGIIACAVVYDpSDSKMDAWP 91
                      88899*************************9998777751567888887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MVDFLQHWII SLYILLERKF RKHPRYFFVF STMGKNKIKH ELISHEPNRR VTFKKRKANL  60
FRKLTEITTL CGIIACAVVY DPSDSKMDAW PSPQEAFYVL ENFKKLPEQR RGQFMMDQKA  120
FLKKNISRLN GQLERARFKN QALDAELLLI EYLEGKNLSD SSRLGSLLAL EDQLAKKISF  180
ITSRIEFMEV LEPNEVDAEI NSDEMGDQG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11857RKFRKHPRYFFVFSTMGKNKIKHELISHEPNRRVTFKKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.24e-28M-type_MADS family protein