PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g597120.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 229aa    MW: 25829.8 Da    PI: 4.405
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g597120.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.63e-3181091101
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+l+++C+++C++apyf +e+   +f  +h +FGa++++++l++lp +er  a  ++++eA+ara dP yG+v+ il+lq+q+ + +a
  Pd.00g597120.m01   8 PCGACKFLKKRCKRGCIFAPYFMHEEaIMDFSSIHNVFGANKMSRILSKLPMSERAVASWTMTFEAHARAVDPTYGCVSYILDLQEQVLNIQA 100
                       7*********************9998469**************************************************************** PP

            DUF260  93 elallkeel 101
                       +l++++e+l
  Pd.00g597120.m01 101 QLDEAHEQL 109
                       ****99985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MSSRTFNPCG ACKFLKKRCK RGCIFAPYFM HEEAIMDFSS IHNVFGANKM SRILSKLPMS  60
ERAVASWTMT FEAHARAVDP TYGCVSYILD LQEQVLNIQA QLDEAHEQLA RAVAPVANPN  120
QDQENSNEQS EVANPIEQAA VAKPTEFESL PQFSFTHTNN VDNENMNLNY HVSGSYKNTV  180
NIPTENVADG WVNNEGTSSM SFFDMEWSFE DVDELLVDPW FSTYISSIN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.19e-43LBD family protein