PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g599080.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 512aa MW: 53597.9 Da PI: 8.361

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g599080.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pd.00g599080.m01 68 FVCEICNKGFQRDQNLQLHRRGH 90 89*******************88 PP
2	zf-C2H2	15.7	4.2e-05	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ Pd.00g599080.m01 144 WKCERCSKKYAVQSDWKAHMKTC 166 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence
MGDLDNSSSP LLTVSTASGE ASLSSSAHET MTIPEPPPKK KRNLPGMPDP EAEVIALSPT 60 TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT TKEVRKRVYV CPETSCVHHN 120 PTRALGDLTG IKKHFCRKHG EKKWKCERCS KKYAVQSDWK AHMKTCGTRE YRCDCGTLFS 180 RRDSFITHRA FCDALAEESA KAQTLAVDGS DGNQNLNNHS PNPNAKGVVA SPPPPPLTPS 240 NTVVSPALSI QSSELPENPI GLSPPTPATT VFASIFAPST ASALISQPPQ TSSPSSFSNQ 300 VSTLGRPDGS TTVPTVSSIN EPTSLSLSTS LYLSSNGSSL FPTPEPQDHR HYAQPAVMSA 360 TALLQKAAQM GAAASNASLL RGFGLATSSS SPSQENSTAL QWNKPESGGG TTQMAAGVGL 420 ELLSTANAAH LTDLMMGPPS QFGGQPMTRD LLGLSIGVGS SGSGASTGGL SALLNSFGGG 480 GSGFDVAAAA AAAYGGGAGS SQRESWEGAQ DR

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence

MGDLDNSSSP LLTVSTASGE ASLSSSAHET MTIPEPPPKK KRNLPGMPDP EAEVIALSPT  60
TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT TKEVRKRVYV CPETSCVHHN  120
PTRALGDLTG IKKHFCRKHG EKKWKCERCS KKYAVQSDWK AHMKTCGTRE YRCDCGTLFS  180
RRDSFITHRA FCDALAEESA KAQTLAVDGS DGNQNLNNHS PNPNAKGVVA SPPPPPLTPS  240
NTVVSPALSI QSSELPENPI GLSPPTPATT VFASIFAPST ASALISQPPQ TSSPSSFSNQ  300
VSTLGRPDGS TTVPTVSSIN EPTSLSLSTS LYLSSNGSSL FPTPEPQDHR HYAQPAVMSA  360
TALLQKAAQM GAAASNASLL RGFGLATSSS SPSQENSTAL QWNKPESGGG TTQMAAGVGL  420
ELLSTANAAH LTDLMMGPPS QFGGQPMTRD LLGLSIGVGS SGSGASTGGL SALLNSFGGG  480
GSGFDVAAAA AAAYGGGAGS SQRESWEGAQ DR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-114	C2H2 family protein