PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g600090.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 202aa    MW: 23394.6 Da    PI: 10.2011
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g600090.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.15.6e-29959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien +nrqvt+skRrng++KKA+EL vLCda v++i++ss+gk++ey+s
  Pd.00g600090.m01  9 KRIENATNRQVTYSKRRNGLFKKAHELTVLCDATVSLIMVSSSGKIHEYIS 59
                      79***********************************************86 PP
2K-box821.3e-2772167296
             K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhl.lGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                       qk++g++ +++++e +q++l+kLk+ +++L++++R++ lGe+L+++ + eL+ +eq++e ++  iR++K +++ +qi++++kk +++ e n++
  Pd.00g600090.m01  72 QKTKGVDIWSSHYEAMQEHLKKLKEVNRSLRKQIRQRvLGECLNDMGFDELRGVEQEMEGAVDVIRKRKIRMISNQIDTTKKKLRSATEMNRN 164
                       6788999***************************98538****************************************************** PP

             K-box  94 Lrk 96 
                       Lr+
  Pd.00g600090.m01 165 LRE 167
                       *96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    
MARGKIQIKR IENATNRQVT YSKRRNGLFK KAHELTVLCD ATVSLIMVSS SGKIHEYISP  60
STTTKQFFDQ FQKTKGVDIW SSHYEAMQEH LKKLKEVNRS LRKQIRQRVL GECLNDMGFD  120
ELRGVEQEME GAVDVIRKRK IRMISNQIDT TKKKLRSATE MNRNLREFDA RDDPHYRLVE  180
NGGEDYESAF GYSSNGGPRI FA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-82MIKC_MADS family protein