PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g603910.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 1197aa MW: 129205 Da PI: 7.1685

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g603910.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.1	9.7e-11	190	211	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+f+++tGtCk+G++CkF+H+ Pd.00g603910.m01 190 DCSFYLKTGTCKFGSSCKFNHP 211 5********************8 PP
2	zf-CCCH	24.6	4.2e-08	282	306	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+f++r+ C +G +C+F+H+ Pd.00g603910.m01 282 GEKDCSFYMRNASCMFGTNCRFNHP 306 7889********************9 PP
3	zf-CCCH	23.7	8.3e-08	672	696	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + + C+f++r+ C +G +C+F+H+ Pd.00g603910.m01 672 GKKDCSFYMRNASCMFGTNCRFNHP 696 6789********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1197 aa Download sequence
MLPAARLLLP VSVSVLYVLY KYLRSGRATE LSEDIAVPLN PDNNDVVSRQ PSHLDPAILE 60 EIRKFDPAVL DEFRKFDPAL LDDFRKFDPA ALDEFRKFDP AALDVIRKLD PAIINQIHKL 120 CVKEKVEGKE EAERNCSGRE NENGNETQSE ESGGGGGENK NENGGEVEKK VVNEERSRRH 180 HYPVRPEAGD CSFYLKTGTC KFGSSCKFNH PHRRKTNKVS KVKMKEREGL AAEKPGLTES 240 KDYFRSGGCK YEKACSFNPR REEPSVAPIL ECNFLGLPIR PGEKDCSFYM RNASCMFGTN 300 CRFNHPDPTA ARESDPPSGY GNGGSASLQG ASSSTAAPWS APRSLNDAPL YVPMVIPPSQ 360 GIPSQDTEWN GYQAPAYLQE RSMPAHQPYL MNNSVTGTNV YKQYPHQQAE EFPERPGQPY 420 PPHAPFETMT RRLQMGLEVI LTLQVSRSLF YKYLRTELIR VPQNPPELSD LDLAILEEIR 480 KLGPALLDKI LKDPTLLDEF RKIDPAVLHE FRKLDPAIIG KILQFCLKDN KEGEEEEDRS 540 TCSGLETAKQ NENGNEETDG GGGENKNQNG GEVEKKVVDE ERSRSQHYPV RPGAGEGKTA 600 RKNRKNNQVS KDKMKEREGL AAEKPGQTEC KDYSRSGGRK YEKACSLNPG RGEPSVAPIL 660 ECNFLGLPIR PGKKDCSFYM RNASCMFGTN CRFNHPDPTA ARESEPPSGY GNGGSASLQG 720 ASSSTAAPWS APRSLNDAPL YVPMVIPHVQ IGSWGNADEV WAQSEAGNKD DASGWAKPAF 780 INENQNDSWK KPSGVDDNKR ASWGKADGGS TWTEQDGDPT WNKQGEGSTW NKQDGSSAWN 840 KPAGDSSWSK QAGGSSWGKQ ADVTAGHESG GVGNQDNGWK RASSFGGSQS IDGVNGDQPE 900 DFNNNRSGGN WRGGSGRGNS DRGGFRGGRG FVDKGGFGGR GYGGRGRGRY QSGGWSNRNE 960 SIDNNSSGWS KGADGAGEGW KRDNGGGSWN QGGGSKNDWQ GRNSSGWSSQ SSGWNQSDVT 1020 KGIGGSGSGW NQTVEAKYTA GTQDKGTGSH NEVGRSWGNN WKSSDASNGD QSSSWKQSTA 1080 AKEVKGNTDQ DGGWNKGPSS NTQAGGWGNQ GSGWNKGTGS GSGGGTGYQP SAAVGGQSSD 1140 WKQSSAAGGA QSSSWNQSGE AKQGTDEGAK PTISWGKAAA ASSWGKGSDG GSSKGGW

Sequence ? help Back to Top

Protein Sequence Length: 1197 aa Download sequence

MLPAARLLLP VSVSVLYVLY KYLRSGRATE LSEDIAVPLN PDNNDVVSRQ PSHLDPAILE  60
EIRKFDPAVL DEFRKFDPAL LDDFRKFDPA ALDEFRKFDP AALDVIRKLD PAIINQIHKL  120
CVKEKVEGKE EAERNCSGRE NENGNETQSE ESGGGGGENK NENGGEVEKK VVNEERSRRH  180
HYPVRPEAGD CSFYLKTGTC KFGSSCKFNH PHRRKTNKVS KVKMKEREGL AAEKPGLTES  240
KDYFRSGGCK YEKACSFNPR REEPSVAPIL ECNFLGLPIR PGEKDCSFYM RNASCMFGTN  300
CRFNHPDPTA ARESDPPSGY GNGGSASLQG ASSSTAAPWS APRSLNDAPL YVPMVIPPSQ  360
GIPSQDTEWN GYQAPAYLQE RSMPAHQPYL MNNSVTGTNV YKQYPHQQAE EFPERPGQPY  420
PPHAPFETMT RRLQMGLEVI LTLQVSRSLF YKYLRTELIR VPQNPPELSD LDLAILEEIR  480
KLGPALLDKI LKDPTLLDEF RKIDPAVLHE FRKLDPAIIG KILQFCLKDN KEGEEEEDRS  540
TCSGLETAKQ NENGNEETDG GGGENKNQNG GEVEKKVVDE ERSRSQHYPV RPGAGEGKTA  600
RKNRKNNQVS KDKMKEREGL AAEKPGQTEC KDYSRSGGRK YEKACSLNPG RGEPSVAPIL  660
ECNFLGLPIR PGKKDCSFYM RNASCMFGTN CRFNHPDPTA ARESEPPSGY GNGGSASLQG  720
ASSSTAAPWS APRSLNDAPL YVPMVIPHVQ IGSWGNADEV WAQSEAGNKD DASGWAKPAF  780
INENQNDSWK KPSGVDDNKR ASWGKADGGS TWTEQDGDPT WNKQGEGSTW NKQDGSSAWN  840
KPAGDSSWSK QAGGSSWGKQ ADVTAGHESG GVGNQDNGWK RASSFGGSQS IDGVNGDQPE  900
DFNNNRSGGN WRGGSGRGNS DRGGFRGGRG FVDKGGFGGR GYGGRGRGRY QSGGWSNRNE  960
SIDNNSSGWS KGADGAGEGW KRDNGGGSWN QGGGSKNDWQ GRNSSGWSSQ SSGWNQSDVT  1020
KGIGGSGSGW NQTVEAKYTA GTQDKGTGSH NEVGRSWGNN WKSSDASNGD QSSSWKQSTA  1080
AKEVKGNTDQ DGGWNKGPSS NTQAGGWGNQ GSGWNKGTGS GSGGGTGYQP SAAVGGQSSD  1140
WKQSSAAGGA QSSSWNQSGE AKQGTDEGAK PTISWGKAAA ASSWGKGSDG GSSKGGW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	7e-62	C3H family protein