PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g603950.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 814aa MW: 89451.2 Da PI: 6.4342

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g603950.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.2	1.1e-06	522	546	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ ++rt C yG +C+F+H+ Pd.00g603950.m01 522 GEKDCPCYMRTLSCMYGTKCRFNHP 546 7789********************9 PP
2	zf-CCCH	19.8	1.4e-06	653	679	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +f+r G Ck+ ++Ck++H++ Pd.00g603950.m01 653 PGQPVCLYFSRAGDCKHKSNCKYHHPK 679 57899********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 814 aa Download sequence
MLPAAAVRVL LPVSASVIYL IYRYLRSGRQ IESSPNTSNN DVVPPPNSGN SDVVPYPELS 60 DRDCTILEEI LKDNHVLLDK ILALEPAFLD GLRKIKPAVL REMVFDPAEL DPVIVDANYF 120 SSGGQRPNLY TSPNPGNDDV LSPNPGKVDT VLQVDPAELD PAIIDAICKL SLKEKEEGEQ 180 EVEVEKKVDD ERSRRHHYPV RPPGAGDSSH NLKTGTHKFG SNCKFNHTRR SKNNQNYFRS 240 GRQHQNRYAP PNPGDNDSFS PNSDVPPNPS NDSVLPPNPG KDDVLPPNHS DTDCDLATLR 300 EILRHKTALL GIIRKLDAGL FGDIQKIDPA VLHEMQADPA EWDPAIIDAI CKLSLEEKDE 360 SEEEVEKKVD EERSRRHHYP VRPPGAGDSS HNLKTGTHQF GSNCKFNLTR RSKNNQVSKN 420 KMKEREGLAE KPGKTECKVS KNKMKEREGL AEKPGKTECK VSKNKMKERE GLAAKPGKTE 480 FKNYFRSGGC KSGNACALNP RRGEASVAPI LENFMGLPIR PGEKDCPCYM RTLSCMYGTK 540 CRFNHPDPTP AGESDPPSGN GNGGPASLQG ALSATAAQWY APISLNNAPL YEPIMIPPSQ 600 EFPSQNTEWN GYQAPERSMP APPPYVMNHS VTETNTYEQY PQQKQVQEFP ERPGQPVCLY 660 FSRAGDCKHK SNCKYHHPKN QTAVPTSCAL SDKGLPLRPG QNICARYSAY GICNSGLASA 720 TGLSVSDSKQ TRVKKARQSC TTRWTSGMKA QAVGLAVTFE VESEAGETLL GEENWGGLEG 780 PADVVAVAVD HEEEATWRGE EGQPLPGEEL EASG

Sequence ? help Back to Top

Protein Sequence Length: 814 aa Download sequence

MLPAAAVRVL LPVSASVIYL IYRYLRSGRQ IESSPNTSNN DVVPPPNSGN SDVVPYPELS  60
DRDCTILEEI LKDNHVLLDK ILALEPAFLD GLRKIKPAVL REMVFDPAEL DPVIVDANYF  120
SSGGQRPNLY TSPNPGNDDV LSPNPGKVDT VLQVDPAELD PAIIDAICKL SLKEKEEGEQ  180
EVEVEKKVDD ERSRRHHYPV RPPGAGDSSH NLKTGTHKFG SNCKFNHTRR SKNNQNYFRS  240
GRQHQNRYAP PNPGDNDSFS PNSDVPPNPS NDSVLPPNPG KDDVLPPNHS DTDCDLATLR  300
EILRHKTALL GIIRKLDAGL FGDIQKIDPA VLHEMQADPA EWDPAIIDAI CKLSLEEKDE  360
SEEEVEKKVD EERSRRHHYP VRPPGAGDSS HNLKTGTHQF GSNCKFNLTR RSKNNQVSKN  420
KMKEREGLAE KPGKTECKVS KNKMKEREGL AEKPGKTECK VSKNKMKERE GLAAKPGKTE  480
FKNYFRSGGC KSGNACALNP RRGEASVAPI LENFMGLPIR PGEKDCPCYM RTLSCMYGTK  540
CRFNHPDPTP AGESDPPSGN GNGGPASLQG ALSATAAQWY APISLNNAPL YEPIMIPPSQ  600
EFPSQNTEWN GYQAPERSMP APPPYVMNHS VTETNTYEQY PQQKQVQEFP ERPGQPVCLY  660
FSRAGDCKHK SNCKYHHPKN QTAVPTSCAL SDKGLPLRPG QNICARYSAY GICNSGLASA  720
TGLSVSDSKQ TRVKKARQSC TTRWTSGMKA QAVGLAVTFE VESEAGETLL GEENWGGLEG  780
PADVVAVAVD HEEEATWRGE EGQPLPGEEL EASG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	2e-73	C3H family protein