PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g603950.m02

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 792aa MW: 86978.3 Da PI: 6.1942

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g603950.m02	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.2	1e-06	500	524	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ ++rt C yG +C+F+H+ Pd.00g603950.m02 500 GEKDCPCYMRTLSCMYGTKCRFNHP 524 7789********************9 PP
2	zf-CCCH	19.8	1.4e-06	631	657	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +f+r G Ck+ ++Ck++H++ Pd.00g603950.m02 631 PGQPVCLYFSRAGDCKHKSNCKYHHPK 657 57899********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 792 aa Download sequence
MLPAAAVRVL LPVSASVIYL IYRYLRSGRQ IESSPNTSNN DVVPPPNSGN SDVVPYPELS 60 DRDCTILEEI LKDNHVLLDK ILALEPAFLD GLRKIKPAVL REMVFDPAEL DPVIVDANYF 120 SSGGQRPNLY TSPNPGNDDV LSPNPGKVDT VLQVDPAELD PAIIDAICKL SLKEKEEGEQ 180 EVEVEKKVDD ERSRRHHYPV RPPGAGDSSH NLKTGTHKFG SNCKFNHTRR SKNNQNYFRS 240 GRQHQNRYAP PNPGDNDSFS PNSDVPPNPS NDSVLPPNPG KDDVLPPNHS DTDCDLATLR 300 EILRHKTALL GIIRKLDAGL FGDIQKIDPA VLHEMQADPA EWDPAIIDAI CKLSLEEKDE 360 SEEEVEKKVD EERSRRHHYP VRPPGAGDSS HNLKTGTHQF GSNCKFNLTR RSKNNQVSKN 420 KMKEREGLAE KPGKTECKVS KNKMKEREGL AAKPGKTEFK NYFRSGGCKS GNACALNPRR 480 GEASVAPILE NFMGLPIRPG EKDCPCYMRT LSCMYGTKCR FNHPDPTPAG ESDPPSGNGN 540 GGPASLQGAL SATAAQWYAP ISLNNAPLYE PIMIPPSQEF PSQNTEWNGY QAPERSMPAP 600 PPYVMNHSVT ETNTYEQYPQ QKQVQEFPER PGQPVCLYFS RAGDCKHKSN CKYHHPKNQT 660 AVPTSCALSD KGLPLRPGQN ICARYSAYGI CNSGLASATG LSVSDSKQTR VKKARQSCTT 720 RWTSGMKAQA VGLAVTFEVE SEAGETLLGE ENWGGLEGPA DVVAVAVDHE EEATWRGEEG 780 QPLPGEELEA SG

Sequence ? help Back to Top

Protein Sequence Length: 792 aa Download sequence

MLPAAAVRVL LPVSASVIYL IYRYLRSGRQ IESSPNTSNN DVVPPPNSGN SDVVPYPELS  60
DRDCTILEEI LKDNHVLLDK ILALEPAFLD GLRKIKPAVL REMVFDPAEL DPVIVDANYF  120
SSGGQRPNLY TSPNPGNDDV LSPNPGKVDT VLQVDPAELD PAIIDAICKL SLKEKEEGEQ  180
EVEVEKKVDD ERSRRHHYPV RPPGAGDSSH NLKTGTHKFG SNCKFNHTRR SKNNQNYFRS  240
GRQHQNRYAP PNPGDNDSFS PNSDVPPNPS NDSVLPPNPG KDDVLPPNHS DTDCDLATLR  300
EILRHKTALL GIIRKLDAGL FGDIQKIDPA VLHEMQADPA EWDPAIIDAI CKLSLEEKDE  360
SEEEVEKKVD EERSRRHHYP VRPPGAGDSS HNLKTGTHQF GSNCKFNLTR RSKNNQVSKN  420
KMKEREGLAE KPGKTECKVS KNKMKEREGL AAKPGKTEFK NYFRSGGCKS GNACALNPRR  480
GEASVAPILE NFMGLPIRPG EKDCPCYMRT LSCMYGTKCR FNHPDPTPAG ESDPPSGNGN  540
GGPASLQGAL SATAAQWYAP ISLNNAPLYE PIMIPPSQEF PSQNTEWNGY QAPERSMPAP  600
PPYVMNHSVT ETNTYEQYPQ QKQVQEFPER PGQPVCLYFS RAGDCKHKSN CKYHHPKNQT  660
AVPTSCALSD KGLPLRPGQN ICARYSAYGI CNSGLASATG LSVSDSKQTR VKKARQSCTT  720
RWTSGMKAQA VGLAVTFEVE SEAGETLLGE ENWGGLEGPA DVVAVAVDHE EEATWRGEEG  780
QPLPGEELEA SG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	7e-77	C3H family protein