PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g603970.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 685aa MW: 74867 Da PI: 6.4429

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g603970.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.6	4.3e-08	331	349	9	27
GGGTS--TTTTT-SS-SSS CS zf-CCCH 9 fartGtCkyGdrCkFaHgp 27 +++tGtCk+ ++CkF+H+p Pd.00g603970.m01 331 YLKTGTCKFVPNCKFNHPP 349 89***************96 PP
2	zf-CCCH	22	2.9e-07	412	432	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C +++tGtC+ G rCkF+H+ Pd.00g603970.m01 412 CWSYLKTGTCNLGRRCKFNHP 432 668*****************8 PP
3	zf-CCCH	22.9	1.5e-07	483	507	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + + C++++++G+Ck +C+F+H+ Pd.00g603970.m01 483 GVKKCPYYMKNGFCKSATNCRFNHP 507 6778********************9 PP
4	zf-CCCH	25.3	2.6e-08	607	633	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f+r G Ck+ + Ck++H++ Pd.00g603970.m01 607 PGQPICNYFLRKGDCKHRSDCKYHHPK 633 5789*********************96 PP
5	zf-CCCH	18.7	3.1e-06	654	678	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C ++ +G+C+ G+ CkF H+ Pd.00g603970.m01 654 GENICTQYSSYGICNSGPACKFDHP 678 6789********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 685 aa Download sequence
MFSAAAVAVR LLLLSASVVY VLYKFWRSGR QTESSPNSGD NGVVPPHSVV RPKSSKNDVV 60 PSDGYLAIVQ EILKNDHVFL NKIRTLDPAV LDKLLKFDPV ALDKLLRIEP AVLRDSALLD 120 PAIIDAICEL SEKEEGDEEA DWSCGRPVTE SSLVIGVPTN SGNNDVVPSN SGNNDVVPPN 180 SSNNDVVPPH SVVPSDGDLA IVESSLVIGV PTNSGNNDVV PSNSGNNDVV PTNSGDNDVV 240 PSNSGNNDVV PPNSGNNDVV PPPELSDRDC TILEEILKDN HVLLDKILAL EPAFLDRLRK 300 IKPAVLREMV FDPAELDPVI VDAIPGDCWC YLKTGTCKFV PNCKFNHPPR ITTKNNRNSF 360 RSGGRRPNLY TTPNPGDPDR ENGNGNETQS EERDKERSRI HHSPVRFEAG DCWSYLKTGT 420 CNLGRRCKFN HPCRRKKGKN NQNYSRSGGC KPGNAFSFNP RRGEPSVAPV QKLNFMDLPI 480 RPGVKKCPYY MKNGFCKSAT NCRFNHPDPT TIGESGPPSG YIDGGPAPVQ GASSSTAWDS 540 LCVPMIPPSQ GIPSQNTEWN GSQDPEYLPE RSIPAPPPYV MNKAVTETNI YEQNPQQKQV 600 EEFPERPGQP ICNYFLRKGD CKHRSDCKYH HPKNQTAVSP SCALSDKGLP LRPGENICTQ 660 YSSYGICNSG PACKFDHPSL STFLL

Sequence ? help Back to Top

Protein Sequence Length: 685 aa Download sequence

MFSAAAVAVR LLLLSASVVY VLYKFWRSGR QTESSPNSGD NGVVPPHSVV RPKSSKNDVV  60
PSDGYLAIVQ EILKNDHVFL NKIRTLDPAV LDKLLKFDPV ALDKLLRIEP AVLRDSALLD  120
PAIIDAICEL SEKEEGDEEA DWSCGRPVTE SSLVIGVPTN SGNNDVVPSN SGNNDVVPPN  180
SSNNDVVPPH SVVPSDGDLA IVESSLVIGV PTNSGNNDVV PSNSGNNDVV PTNSGDNDVV  240
PSNSGNNDVV PPNSGNNDVV PPPELSDRDC TILEEILKDN HVLLDKILAL EPAFLDRLRK  300
IKPAVLREMV FDPAELDPVI VDAIPGDCWC YLKTGTCKFV PNCKFNHPPR ITTKNNRNSF  360
RSGGRRPNLY TTPNPGDPDR ENGNGNETQS EERDKERSRI HHSPVRFEAG DCWSYLKTGT  420
CNLGRRCKFN HPCRRKKGKN NQNYSRSGGC KPGNAFSFNP RRGEPSVAPV QKLNFMDLPI  480
RPGVKKCPYY MKNGFCKSAT NCRFNHPDPT TIGESGPPSG YIDGGPAPVQ GASSSTAWDS  540
LCVPMIPPSQ GIPSQNTEWN GSQDPEYLPE RSIPAPPPYV MNKAVTETNI YEQNPQQKQV  600
EEFPERPGQP ICNYFLRKGD CKHRSDCKYH HPKNQTAVSP SCALSDKGLP LRPGENICTQ  660
YSSYGICNSG PACKFDHPSL STFLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	1e-78	C3H family protein