PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g603980.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 528aa MW: 58300.7 Da PI: 4.6114

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g603980.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.9	5.4e-11	313	336	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C+++++tGtCk+ ++CkF+H++ Pd.00g603980.m01 313 PDCSYYLKTGTCKFRSNCKFNHPR 336 78********************96 PP
2	zf-CCCH	30.4	6.5e-10	382	407	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++++r+ C yG +C+F+H+ Pd.00g603980.m01 382 PGERDCPYYMRNLSCGYGLSCRFNHP 407 5789*********************9 PP
3	zf-CCCH	25.3	2.7e-08	455	481	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +f+ tG Ck+ ++Ck++H++ Pd.00g603980.m01 455 PGQPVCIYFSTTGDCKFKSNCKYHHPK 481 5789*********************96 PP
4	zf-CCCH	22.3	2.3e-07	502	526	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C ++ +G+C+ G+ CkF H+ Pd.00g603980.m01 502 GQNICTQYSTYGICNSGPACKFDHP 526 6789********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence
MFPAAAVALR LLLPVSVSLY VLYKYWRSGR QTESWVPPNS GDNGVVRPKS SKNDVVPSDG 60 DLAFVEEILK NDHVFLNKIR TLDPAVLDEL LKIDPVALDA LLRIDPAVLR DSAELDPAII 120 DAICELSEKE EGDEEADWSC SRPVTESSLV IGVPTNSGNN DVVPSNSGNN DVAPSNSGNN 180 DVVPPNSGNN DVVPCPELSD RDLAILEEIL KDDPVLLDEI RTHDPAVINE LRKFDPAVLR 240 EMVLDSAEVD PTIIDAIRKL CLKRKEEDEQ EAKGSCSGRE TESENENGNE TRSQERDEET 300 SRSRDYPLRP EAPDCSYYLK TGTCKFRSNC KFNHPRTTTK NNQDYFWSGG RKDGRDGSFN 360 PRSREPFAAP FVENFMGLPI RPGERDCPYY MRNLSCGYGL SCRFNHPDPT PAGESDPPSG 420 YGNGGPASSS QGIPSRNTEH NGYQQQQVEE LPQRPGQPVC IYFSTTGDCK FKSNCKYHHP 480 KNQTAVSPSC ALNDKGLPLR PGQNICTQYS TYGICNSGPA CKFDHPSL

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence

MFPAAAVALR LLLPVSVSLY VLYKYWRSGR QTESWVPPNS GDNGVVRPKS SKNDVVPSDG  60
DLAFVEEILK NDHVFLNKIR TLDPAVLDEL LKIDPVALDA LLRIDPAVLR DSAELDPAII  120
DAICELSEKE EGDEEADWSC SRPVTESSLV IGVPTNSGNN DVVPSNSGNN DVAPSNSGNN  180
DVVPPNSGNN DVVPCPELSD RDLAILEEIL KDDPVLLDEI RTHDPAVINE LRKFDPAVLR  240
EMVLDSAEVD PTIIDAIRKL CLKRKEEDEQ EAKGSCSGRE TESENENGNE TRSQERDEET  300
SRSRDYPLRP EAPDCSYYLK TGTCKFRSNC KFNHPRTTTK NNQDYFWSGG RKDGRDGSFN  360
PRSREPFAAP FVENFMGLPI RPGERDCPYY MRNLSCGYGL SCRFNHPDPT PAGESDPPSG  420
YGNGGPASSS QGIPSRNTEH NGYQQQQVEE LPQRPGQPVC IYFSTTGDCK FKSNCKYHHP  480
KNQTAVSPSC ALNDKGLPLR PGQNICTQYS TYGICNSGPA CKFDHPSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-68	C3H family protein