PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g604070.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

GRAS

Protein Properties

Length: 563aa MW: 62223 Da PI: 6.2367

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g604070.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	93.7	3e-29	157	277	1	119
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal..ppsetseknsseelaalklfsevsPil 91 lv+lL++cAeav+ +d++ a+alL++l+ +a g+++qR+a++f+++La+rla ++ + + +p ++++ +++ al+l +e++P + Pd.00g604070.m01 157 LVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLANRLALVQPLGAVGFigSPMNAKDFALDKKEEALRLVYEICPHI 249 689************************************************9955544434413444444444999999******** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdi 119 +f+h++aN+ Ilea+ege+ vH++D+++ Pd.00g604070.m01 250 QFGHFVANSSILEAFEGESYVHVVDLGM 277 ************************97 PP
2	GRAS	89.5	5.4e-28	279	374	180	278
GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 ++v+++le+l++e++++ gE+l+Vn++lqlh +++es + +vL++v +lsPk++v+veq+++hn++ Fl rf+eal+yysa+fdsl+ Pd.00g604070.m01 279 LVVESNLENLRPEDIKLLDGEVLVVNSILQLHCVVKESRGALN---SVLQMVHELSPKILVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLD 368 45788****************************88877777...8****************************************** PP GRAS 273 aklpre 278 a lp+ Pd.00g604070.m01 369 AMLPKY 374 9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence
MAPSRNFMPE EYMVNHERTN KMSAFDLISH SAMSCYSNPY MPLLEEGNAS ALTLPYSDES 60 GDHKRLKRTI SIAESMSSHN SLYSGGSNNS CVTNGSISRS SSTNSLNTLP RLHFRDHIWT 120 YSQRYLAAEA VEEAAAAMTN AEGNGAEEDG TADGMRLVQL LIACAEAVAC RDKSHASALL 180 SELRANALVF GSSFQRVASC FVQGLANRLA LVQPLGAVGF IGSPMNAKDF ALDKKEEALR 240 LVYEICPHIQ FGHFVANSSI LEAFEGESYV HVVDLGMTLV VESNLENLRP EDIKLLDGEV 300 LVVNSILQLH CVVKESRGAL NSVLQMVHEL SPKILVLVEQ DSSHNGPFFL GRFMEALHYY 360 SAIFDSLDAM LPKYDTRPFP SKCHLFSFFP SRPRAKTLAK PRIFLPHLVA SLEQVDETYI 420 MVKPDGVQRG LVGEIISRFE KKGFKLTGLK LFQCPQDLAE EHYKDLKGKS FFPKLIDYIV 480 SGPVVCMAWE GVGVVAAARK LIGSTNPLQA EPGTIRGDLA VQTGRNVVHG SDSPENGKRE 540 IALWFKEGEL CQWTPTQEPW LRE

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence

MAPSRNFMPE EYMVNHERTN KMSAFDLISH SAMSCYSNPY MPLLEEGNAS ALTLPYSDES  60
GDHKRLKRTI SIAESMSSHN SLYSGGSNNS CVTNGSISRS SSTNSLNTLP RLHFRDHIWT  120
YSQRYLAAEA VEEAAAAMTN AEGNGAEEDG TADGMRLVQL LIACAEAVAC RDKSHASALL  180
SELRANALVF GSSFQRVASC FVQGLANRLA LVQPLGAVGF IGSPMNAKDF ALDKKEEALR  240
LVYEICPHIQ FGHFVANSSI LEAFEGESYV HVVDLGMTLV VESNLENLRP EDIKLLDGEV  300
LVVNSILQLH CVVKESRGAL NSVLQMVHEL SPKILVLVEQ DSSHNGPFFL GRFMEALHYY  360
SAIFDSLDAM LPKYDTRPFP SKCHLFSFFP SRPRAKTLAK PRIFLPHLVA SLEQVDETYI  420
MVKPDGVQRG LVGEIISRFE KKGFKLTGLK LFQCPQDLAE EHYKDLKGKS FFPKLIDYIV  480
SGPVVCMAWE GVGVVAAARK LIGSTNPLQA EPGTIRGDLA VQTGRNVVHG SDSPENGKRE  540
IALWFKEGEL CQWTPTQEPW LRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21450.1	1e-30	GRAS family protein