PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g607820.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 302aa    MW: 33382.3 Da    PI: 8.809
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g607820.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.51.6e-41721711100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++kll++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq++l++l+a+
  Pd.00g607820.m01  72 PCAACKILRRRCAEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKLLQELPESHRADAVSSMVYEANARIRDPVYGCAGAICQLQKHLSELQAQ 164
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la++++e
  Pd.00g607820.m01 165 LAKTQAE 171
                       ***9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MEFNTSTPSA SSPPLSISQL SSPTASFPSP NNSLQLSNLS SPNYAVKNNI NTNVNNPTSP  60
SPPPPPPVVL SPCAACKILR RRCAEKCVLA PYFPPTEPLK FTIAHRVFGA SNIIKLLQEL  120
PESHRADAVS SMVYEANARI RDPVYGCAGA ICQLQKHLSE LQAQLAKTQA ELLNMQCQQG  180
NLIALISRKL EKMSGAGKKV ADVAFKASRK IDWEGMAKLL VSDEARKEFA SLRRAFDEVN  240
TTLQTKFSQE PEPIDWEYYR KGIGSRLVDM YKEAYDSVQV PKYVDTVTPE YKPKFDQLMG  300
LS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-64LBD family protein