PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g611800.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 439aa MW: 50542.5 Da PI: 8.485

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g611800.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.6	1.2e-06	63	84	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg +F+ + +Lk+H+++H Pd.00g611800.m01 63 TCKECGATFKKPAYLKQHMQSH 84 6*******************99 PP
2	zf-C2H2	18.8	4.4e-06	162	183	1	20
EEET..TTTEEESSHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHi 20 y+C+ dC sF+rk++L+rH+ Pd.00g611800.m01 162 YVCSvdDCRSSFRRKDHLNRHL 183 99*******************8 PP
3	zf-C2H2	16.8	1.9e-05	191	216	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +C++ F ++ n +rH r H Pd.00g611800.m01 191 FKCPieNCNRGFVSQGNVRRHVRElH 216 89*********************988 PP
4	zf-C2H2	23.1	1.8e-07	231	253	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+dCgk+F+ s L++H ++H Pd.00g611800.m01 231 HVCQDCGKVFKFASKLQKHENSH 253 79******************999 PP
5	zf-C2H2	13	0.0003	321	345	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C +Fs+ksnL++H + H Pd.00g611800.m01 321 KCSykGCLHTFSTKSNLHQHVKAvH 345 688889**************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence
MGIGEAEEEG PIFRDIRRYY CEYCGICRSK KTLIASHMLT HHKEEMEMAK EADGEGEREK 60 SNTCKECGAT FKKPAYLKQH MQSHSLELIF YVLDEVSVVF ASIEVISFAG IVILKKYLLD 120 NVEHWIPHKE LQNAQGFDLN GPVPGGRPPG KLHQASLNHR PYVCSVDDCR SSFRRKDHLN 180 RHLLQDQGKL FKCPIENCNR GFVSQGNVRR HVRELHNEDD PSANVGGQKQ HVCQDCGKVF 240 KFASKLQKHE NSHVKLDSVE AFCSEPGCMK YFSNQKCLKA HIQSCHQHIT CEICGTKKLK 300 RNIERHLYTH EGGRASVEII KCSYKGCLHT FSTKSNLHQH VKAVHLEHKP FVCSFSGCGM 360 RFAYKHVRDK HEKTGRHVYA YGDFEEADEQ FRSRPRGGRK RKYPTIEMLV RKRVTPPDQL 420 GQESEYRSWL LSQEAEDEN

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence

MGIGEAEEEG PIFRDIRRYY CEYCGICRSK KTLIASHMLT HHKEEMEMAK EADGEGEREK  60
SNTCKECGAT FKKPAYLKQH MQSHSLELIF YVLDEVSVVF ASIEVISFAG IVILKKYLLD  120
NVEHWIPHKE LQNAQGFDLN GPVPGGRPPG KLHQASLNHR PYVCSVDDCR SSFRRKDHLN  180
RHLLQDQGKL FKCPIENCNR GFVSQGNVRR HVRELHNEDD PSANVGGQKQ HVCQDCGKVF  240
KFASKLQKHE NSHVKLDSVE AFCSEPGCMK YFSNQKCLKA HIQSCHQHIT CEICGTKKLK  300
RNIERHLYTH EGGRASVEII KCSYKGCLHT FSTKSNLHQH VKAVHLEHKP FVCSFSGCGM  360
RFAYKHVRDK HEKTGRHVYA YGDFEEADEQ FRSRPRGGRK RKYPTIEMLV RKRVTPPDQL  420
GQESEYRSWL LSQEAEDEN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	394	402	RPRGGRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-114	C2H2 family protein