PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g613830.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 206aa    MW: 22855.5 Da    PI: 5.605
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g613830.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260111.75.1e-3513111199
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +Ca+Ck +rrkC + C +ap+fpa++ ++f+n+hk+FG+sn++k+++ + +++r++a++s++ e++ar +dPv+G++g+i+ l+ q++ l+ e
  Pd.00g613830.m01  13 PCASCKQQRRKCDETCEMAPHFPASRYSEFQNAHKIFGVSNIQKIMAMAAPDQRQAAAESILTEGNARKNDPVNGCLGIIRGLNAQIQGLERE 105
                       7******************************************************************************************** PP

            DUF260  94 lallke 99 
                       l+ +k+
  Pd.00g613830.m01 106 LHIMKQ 111
                       *99887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    
MENRDQGAAQ NHPCASCKQQ RRKCDETCEM APHFPASRYS EFQNAHKIFG VSNIQKIMAM  60
AAPDQRQAAA ESILTEGNAR KNDPVNGCLG IIRGLNAQIQ GLERELHIMK QHDQSDGLNS  120
PIHPDLPSHV MVEMRKYEQG YNYWSTLEDA EEKVFDIQLI EPVLFESNLK GNASSSAPGE  180
SSAAASKAKE KQPSKSLQEK TTEDDA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.13e-27LBD family protein