PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g617940.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

MIKC_MADS

Protein Properties

Length: 1091aa MW: 121596 Da PI: 4.7267

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g617940.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.7	6.3e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ien++nrqvt+skRrngi+KKA+EL vLCda+v++i++s+tgk++ey+s Pd.00g617940.m01 9 KLIENHTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMLSNTGKMHEYIS 59 569**********************************************86 PP
2	K-box	78.9	1.2e-26	71	164	1	94
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 yq++ g++l++++++ ++ l kLk+ +++L+re+R++lG dL+ L++ +L++Le+++ +sl+ iR++K+++l++q+e+ +kk k+l+e+ + Pd.00g617940.m01 71 YQHTLGVDLWSSHYQAMKDTLWKLKEINNKLRREIRQRLGHDLNGLTYDQLHSLEDKMASSLEAIRERKYHVLKTQMETYKKKVKNLEERRGN 163 67888999********************************************************************************98765 PP K-box 94 L 94 + Pd.00g617940.m01 164 M 164 4 PP

Sequence ? help Back to Top
Protein Sequence Length: 1091 aa Download sequence
MGRGKIEIKL IENHTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMLSN TGKMHEYISP 60 TTTTKRMYDD YQHTLGVDLW SSHYQAMKDT LWKLKEINNK LRREIRQRLG HDLNGLTYDQ 120 LHSLEDKMAS SLEAIRERKY HVLKTQMETY KKKVKNLEER RGNMLHSYFD QEVASEDPQY 180 GYVDNEGDYE SAVALANGAF GTFRSPELGR LSDSVSATFS PPLSEINSSR GLKIHGDLSN 240 FENEELRIQF QVQFSKRYQR DQSHMEAAAS APPWIPEDDL RLKKAMEAGA SLEALAKGAV 300 RFSRKFSVQE LRERWSSLLY DADISAEASS RMLEVEGCNS SAAFKSSRVG SSRDSKRKGE 360 SIRKHYYAMQ KRLRTSNSVD PNSYHKKNFD PNFLFAPHLE NGEALEENFG VGDHNQPLFM 420 DCNDNESNAA DAFRAGECVS IGNHGVEGVV REACPNGFVK QVSLLPNGLG EDTFFHDPAC 480 EDLPTQGDDL INFANALDVE DIGPSHASTD EPLWKTIEDV PAPEMPIDVS LGVNGEDAEK 540 TLVVPDDTDG ENIGSSQYEV VHSEAMLNDR EVCDELNRSV TISGGDYADI YLTNEDELTF 600 MDVNGKESMD KSSYESLKPI PLSSPKDVHE YVAPDPCQPQ KLVSDSFQDV SHNVHTAKMP 660 DSCQPQNLIS ETCQDVSHNV HAAEMDVATK PSHSQHDEQR DISSAEANNP SSTSVPNPLT 720 PELREKEMIC TLNTEDPEIP CNDDIFPPTG TVHAVVQPTL KEASGLASST GKRKCDQQTI 780 TLMKEEDPAQ PFKVPRMVGH DTITENSPNH ALFSFGIKAA YGDSNGLASV SKHDKNVLAD 840 PSQCRSAHQP PKSITNRVLK EEGIVAPSTV AELAPVITEP GSTKMTFLEP EPNPSALDCE 900 ESEEESDDDV DDDDADVPYF SDIEQMILEM DLCPDDQDSY FSKIASAYQD EDSKRHIMRL 960 EQCARSSMQR DLASKGALAV LYGRHVKEYI KKTEVILGRA TEDNEVDIDL GKEGLHNKIS 1020 RRQAVIKMEG DGSFSLKNLG KGSIFLNGKE VTVGQLVSLS SSNLIEIREM AFVFEINHKY 1080 AKFEWSPGRG P

Sequence ? help Back to Top

Protein Sequence Length: 1091 aa Download sequence

MGRGKIEIKL IENHTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMLSN TGKMHEYISP  60
TTTTKRMYDD YQHTLGVDLW SSHYQAMKDT LWKLKEINNK LRREIRQRLG HDLNGLTYDQ  120
LHSLEDKMAS SLEAIRERKY HVLKTQMETY KKKVKNLEER RGNMLHSYFD QEVASEDPQY  180
GYVDNEGDYE SAVALANGAF GTFRSPELGR LSDSVSATFS PPLSEINSSR GLKIHGDLSN  240
FENEELRIQF QVQFSKRYQR DQSHMEAAAS APPWIPEDDL RLKKAMEAGA SLEALAKGAV  300
RFSRKFSVQE LRERWSSLLY DADISAEASS RMLEVEGCNS SAAFKSSRVG SSRDSKRKGE  360
SIRKHYYAMQ KRLRTSNSVD PNSYHKKNFD PNFLFAPHLE NGEALEENFG VGDHNQPLFM  420
DCNDNESNAA DAFRAGECVS IGNHGVEGVV REACPNGFVK QVSLLPNGLG EDTFFHDPAC  480
EDLPTQGDDL INFANALDVE DIGPSHASTD EPLWKTIEDV PAPEMPIDVS LGVNGEDAEK  540
TLVVPDDTDG ENIGSSQYEV VHSEAMLNDR EVCDELNRSV TISGGDYADI YLTNEDELTF  600
MDVNGKESMD KSSYESLKPI PLSSPKDVHE YVAPDPCQPQ KLVSDSFQDV SHNVHTAKMP  660
DSCQPQNLIS ETCQDVSHNV HAAEMDVATK PSHSQHDEQR DISSAEANNP SSTSVPNPLT  720
PELREKEMIC TLNTEDPEIP CNDDIFPPTG TVHAVVQPTL KEASGLASST GKRKCDQQTI  780
TLMKEEDPAQ PFKVPRMVGH DTITENSPNH ALFSFGIKAA YGDSNGLASV SKHDKNVLAD  840
PSQCRSAHQP PKSITNRVLK EEGIVAPSTV AELAPVITEP GSTKMTFLEP EPNPSALDCE  900
ESEEESDDDV DDDDADVPYF SDIEQMILEM DLCPDDQDSY FSKIASAYQD EDSKRHIMRL  960
EQCARSSMQR DLASKGALAV LYGRHVKEYI KKTEVILGRA TEDNEVDIDL GKEGLHNKIS  1020
RRQAVIKMEG DGSFSLKNLG KGSIFLNGKE VTVGQLVSLS SSNLIEIREM AFVFEINHKY  1080
AKFEWSPGRG P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	8e-63	MIKC_MADS family protein