PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g619050.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 770aa MW: 82398.9 Da PI: 9.8064

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g619050.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.3e-05	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pd.00g619050.m01 61 FVCEICNKGFQRDQNLQLHRRGH 83 89******************988 PP
2	zf-C2H2	10.6	0.0017	137	159	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Pd.00g619050.m01 137 WKCDKCSKKYAVQSDWKAHSKIC 159 58*****************9876 PP
3	zf-C2H2	16.5	2.3e-05	215	237	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pd.00g619050.m01 215 FVCEICNKGFQRDQNLQLHRRGH 237 89******************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 770 aa Download sequence
MPTDVDNSST ASGEASVSSS GNQPAPPKPT TKKKRNLPGM PDPDAEVIAL SPKTLLATNR 60 FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKR VYVCPEPSCV HHDPSRALGD 120 LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICD NSSTASGEAS VSSSGNQTAP 180 PKPTTKKKRN LPGMPDPDAE VIALSPKTLL ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP 240 WKLRQRSSKE VKKRVYVCPE PSCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKKY 300 AVQSDWKAHS KICGTREYKC DCGTLFSRRD SFITHRAFCD ALAEESARGH TQTPTQTQTE 360 VNLNSESDPK AQSANSPPQP TPQPPVPSQA TTSSVPSQSA GLLSSPLPST QNPVTELPEN 420 PTQTMEEAPA VTGPKGNCSS SNSSSSNGST SSSVFASLFA SSTASASLQP LQPPAFTDLV 480 RAMGNPDSTT DLAPSSSVEP ISLGLSTSHG SSLFGPAGQE RRQYAPPPQP AMSATALLQK 540 AAQMGAAATN ASLLRGFGIM SSSSSSAQQE SLQWSQRQAE PDSASVAAGL GLALPCDGGS 600 GWKELMMGSP SMFGPKQTTL DLLGLGMAAG NSPSGGLSAL ITSIGGGLDV AAAAASFGGG 660 EYSGCLIVCK SVNDWVIDGG DLEEVLILET LESSLVLGRD SIAGLISKTR ARRRGAAVRQ 720 LPLLLELPFG AEPVAQRGLS VDKTGMRRHH QRRRRSRRLN PTSSWTGSSQ

Sequence ? help Back to Top

Protein Sequence Length: 770 aa Download sequence

MPTDVDNSST ASGEASVSSS GNQPAPPKPT TKKKRNLPGM PDPDAEVIAL SPKTLLATNR  60
FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVKKR VYVCPEPSCV HHDPSRALGD  120
LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICD NSSTASGEAS VSSSGNQTAP  180
PKPTTKKKRN LPGMPDPDAE VIALSPKTLL ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP  240
WKLRQRSSKE VKKRVYVCPE PSCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKKY  300
AVQSDWKAHS KICGTREYKC DCGTLFSRRD SFITHRAFCD ALAEESARGH TQTPTQTQTE  360
VNLNSESDPK AQSANSPPQP TPQPPVPSQA TTSSVPSQSA GLLSSPLPST QNPVTELPEN  420
PTQTMEEAPA VTGPKGNCSS SNSSSSNGST SSSVFASLFA SSTASASLQP LQPPAFTDLV  480
RAMGNPDSTT DLAPSSSVEP ISLGLSTSHG SSLFGPAGQE RRQYAPPPQP AMSATALLQK  540
AAQMGAAATN ASLLRGFGIM SSSSSSAQQE SLQWSQRQAE PDSASVAAGL GLALPCDGGS  600
GWKELMMGSP SMFGPKQTTL DLLGLGMAAG NSPSGGLSAL ITSIGGGLDV AAAAASFGGG  660
EYSGCLIVCK SVNDWVIDGG DLEEVLILET LESSLVLGRD SIAGLISKTR ARRRGAAVRQ  720
LPLLLELPFG AEPVAQRGLS VDKTGMRRHH QRRRRSRRLN PTSSWTGSSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-102	C2H2 family protein