PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g619300.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

HD-ZIP

Protein Properties

Length: 214aa MW: 24627.7 Da PI: 7.2589

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g619300.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.1	1.7e-19	59	112	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++t+eq++ Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ Pd.00g619300.m01 59 KRKLTAEQVNLLELNFGNEHKLESEKKDRLASELGLDPRQVAVWFQNRRARWKN 112 5689************************************************95 PP
2	HD-ZIP_I/II	118.7	3.1e-38	58	149	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+l++eqv+lLE +F +e+kLe+e+K +la+eLgl+prqvavWFqnrRAR+k+k+lE++y+ Lk+++d+ ++en++Le+e+++L+e+l+e Pd.00g619300.m01 58 KKRKLTAEQVNLLELNFGNEHKLESEKKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKEHDSTVSENRKLESEMSKLKEQLSE 149 9****************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence
MTTKTNHQVV EEDDHMLLIS HLYPSDVYTQ IVPQQGASKP KRRRKKSKSG EAGGAGLKKR 60 KLTAEQVNLL ELNFGNEHKL ESEKKDRLAS ELGLDPRQVA VWFQNRRARW KNKKLEEEYS 120 NLKKEHDSTV SENRKLESEM SKLKEQLSEA AKEIQRLSER VDHGGSSNSP SSSLSMDAID 180 PPFLGEFGVE EYDGVFYMPQ NNYIHGMEWM NLYM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	41	60	KRRRKKSKSGEAGGAGLKKR
2	41	61	KRRRKKSKSGEAGGAGLKKRK
3	42	61	KRRRKKSKSGEAGGAGLKKR
4	42	62	KRRRKKSKSGEAGGAGLKKRK
5	43	63	KRRRKKSKSGEAGGAGLKKRK
6	44	64	KRRRKKSKSGEAGGAGLKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	2e-66	HD-ZIP family protein