PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g619700.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family LBD
Protein Properties Length: 200aa    MW: 22533.9 Da    PI: 4.623
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g619700.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26080.92e-2518318100
            DUF260  18 lapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                       +apyfpa++ ++f+n++k+FG+sn++k+++ + +++r++a++s++ e++ar +dPv+G++g+i+ l+ q++ l+ el+ +k++
  Pd.00g619700.m01   1 MAPYFPASRYSEFQNAQKIFGVSNIQKIMAMAAPDQRQAAAESILTEGNARKNDPVHGCLGIIRGLNAQIQGLERELHIVKQH 83 
                       59*****************************************************************************9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    
MAPYFPASRY SEFQNAQKIF GVSNIQKIMA MAAPDQRQAA AESILTEGNA RKNDPVHGCL  60
GIIRGLNAQI QGLERELHIV KQHLELCKEK EELDGKKNQS KEEDLQHDQS DGLNFPSPIL  120
PDLPSHVMAE MRKYEQGYNY WSTLEDAEEE RSLTSGSQNQ DGKEKEEGDI ARWEESAAAS  180
KAKEKQPSES LREKTTEDEA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.13e-20LBD family protein