PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g627460.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C3H

Protein Properties

Length: 458aa MW: 49896.7 Da PI: 8.1637

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g627460.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.4	8.9e-12	74	100	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C yG++C+F+H++ Pd.00g627460.m01 74 PGEPDCIYYLRTGLCGYGSNCRFNHPK 100 5789*********************96 PP
2	zf-CCCH	38.5	2e-12	118	142	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +f++tGtCkyG++CkF+H++ Pd.00g627460.m01 118 QPDCGYFLKTGTCKYGSTCKFHHPR 142 789********************96 PP
3	zf-CCCH	38	2.7e-12	165	187	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G+ CkF+H++ Pd.00g627460.m01 165 SCPYYMRTGSCKFGPACKFHHPQ 187 6********************97 PP
4	zf-CCCH	36.1	1.1e-11	303	328	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ tGtCkyG Ck++H++ Pd.00g627460.m01 303 DQPECRYFMSTGTCKYGIDCKYHHPK 328 689*********************96 PP
5	zf-CCCH	33.4	7.4e-11	344	370	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++ +G+CkyG++C+F H++ Pd.00g627460.m01 344 PGQPPCSYYIMYGICKYGPTCRFDHPF 370 5899*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence
MSLIDETERS RAKQNKGRVY TTSVLPMPDT RQALRNAVPN QSDGNVEEAF WRLNINDNQD 60 GGGVAQSNPY PDRPGEPDCI YYLRTGLCGY GSNCRFNHPK YGSQGAQYNG ELPERVGQPD 120 CGYFLKTGTC KYGSTCKFHH PRDRRGAGPV VFNILGLPMH QEEKSCPYYM RTGSCKFGPA 180 CKFHHPQPQS LGTVLPAFGA AGSTVLPSSG LPYAGGLSAW SFPRAPYLSG PRLQSPHSYM 240 PVVLPPQGIV PAHGWNTYVG NISPVTSTGI LGSNLTYNSR TQGESASNGQ VHLSSSSLPH 300 RPDQPECRYF MSTGTCKYGI DCKYHHPKER IAESTHPLGL PSRPGQPPCS YYIMYGICKY 360 GPTCRFDHPF VEHSAGYNFG MNALPLDSAL LSYPRSWSVA HGLETSPSIS SKFPDGVKKP 420 VNNKYENSDT KTAEDSPEQA GSAPPSPTSS EPVQDQSG

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence

MSLIDETERS RAKQNKGRVY TTSVLPMPDT RQALRNAVPN QSDGNVEEAF WRLNINDNQD  60
GGGVAQSNPY PDRPGEPDCI YYLRTGLCGY GSNCRFNHPK YGSQGAQYNG ELPERVGQPD  120
CGYFLKTGTC KYGSTCKFHH PRDRRGAGPV VFNILGLPMH QEEKSCPYYM RTGSCKFGPA  180
CKFHHPQPQS LGTVLPAFGA AGSTVLPSSG LPYAGGLSAW SFPRAPYLSG PRLQSPHSYM  240
PVVLPPQGIV PAHGWNTYVG NISPVTSTGI LGSNLTYNSR TQGESASNGQ VHLSSSSLPH  300
RPDQPECRYF MSTGTCKYGI DCKYHHPKER IAESTHPLGL PSRPGQPPCS YYIMYGICKY  360
GPTCRFDHPF VEHSAGYNFG MNALPLDSAL LSYPRSWSVA HGLETSPSIS SKFPDGVKKP  420
VNNKYENSDT KTAEDSPEQA GSAPPSPTSS EPVQDQSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	1e-117	C3H family protein