PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g636550.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

HB-PHD

Protein Properties

Length: 581aa MW: 64005.9 Da PI: 4.6302

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g636550.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	41	3.2e-13	416	459	9	52
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + +++L + F++n+yp+++++e LA++lgL +qV+ WF N R Pd.00g636550.m01 416 EAVTQRLCKSFKENHYPDRSMKESLARELGLMAKQVSKWFENAR 459 667899************************************99 PP
2	PHD	39.2	1.6e-13	48	103	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ +++++lCdg C++ fH+ Cl+++l se++p + wlC+ C++k Pd.00g636550.m01 48 FCAKCGSkdVSLDNDIILCDGaCDRGFHQFCLEPPLLSEDIPPDdeGWLCPGCDCK 103 699*964444****66***************99999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence
MSERDIQTLV LILEALDCRL VDNLEKLKPE KELQRATSEI LRRKLTIFCA KCGSKDVSLD 60 NDIILCDGAC DRGFHQFCLE PPLLSEDIPP DDEGWLCPGC DCKVDCIDLL NDSQGTDLSV 120 TDSWEKVFPE AAAAASAGEN QDNHGLPSDD SDDNDYDPDG PETDDKVEGE ESSSDESEYA 180 SASDGLETPK SNDEQYLGLP SEDSEDDDYN PYAPDVHEDV KQESSSSDFT SDSEDLGAAL 240 DDNIMSSEDV EGPKSMSLGS SRRGQKKHSL KDELMSLLES GPGQGESAPL SGKRHIERLD 300 YKRLHDEAYG NVPTDSSDDE DWNDIAMQRK RKNGTGQVAN RSPNGKTSNI KNGVITKDIK 360 PDVDKNENTP RRTPHRKSNV EDTSNLSNKS PKGSTKSGST SGRAGSSRST YSRLGEAVTQ 420 RLCKSFKENH YPDRSMKESL ARELGLMAKQ VSKWFENARH CLKVGVDKSA SENCAPSPQT 480 NRKQLEQGDA IVGDSDHSGA QNKELHRTDD PMIGCCSRDV KDSELVTPGS SRSKLSTPNN 540 RKRKRRSDDP DPKTETPTPP AEPETNRKPS RVMTRRRKSV S

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence

MSERDIQTLV LILEALDCRL VDNLEKLKPE KELQRATSEI LRRKLTIFCA KCGSKDVSLD  60
NDIILCDGAC DRGFHQFCLE PPLLSEDIPP DDEGWLCPGC DCKVDCIDLL NDSQGTDLSV  120
TDSWEKVFPE AAAAASAGEN QDNHGLPSDD SDDNDYDPDG PETDDKVEGE ESSSDESEYA  180
SASDGLETPK SNDEQYLGLP SEDSEDDDYN PYAPDVHEDV KQESSSSDFT SDSEDLGAAL  240
DDNIMSSEDV EGPKSMSLGS SRRGQKKHSL KDELMSLLES GPGQGESAPL SGKRHIERLD  300
YKRLHDEAYG NVPTDSSDDE DWNDIAMQRK RKNGTGQVAN RSPNGKTSNI KNGVITKDIK  360
PDVDKNENTP RRTPHRKSNV EDTSNLSNKS PKGSTKSGST SGRAGSSRST YSRLGEAVTQ  420
RLCKSFKENH YPDRSMKESL ARELGLMAKQ VSKWFENARH CLKVGVDKSA SENCAPSPQT  480
NRKQLEQGDA IVGDSDHSGA QNKELHRTDD PMIGCCSRDV KDSELVTPGS SRSKLSTPNN  540
RKRKRRSDDP DPKTETPTPP AEPETNRKPS RVMTRRRKSV S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	541	546	RKRKRR
2	574	579	TRRRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	2e-52	HB-PHD family protein