PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g639590.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 263aa MW: 28534.9 Da PI: 6.9829

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g639590.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.9	6.1e-42	8	106	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvh+++Gasnv k+l++l+ +reda++sl+yeAear+rdPvyG+vg+i+ lq +l+q +++ Pd.00g639590.m01 8 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHRVYGASNVAKILNELNAAHREDAVTSLAYEAEARLRDPVYGCVGFISILQGKLKQIQTD 100 7*******************************************************************************************9 PP DUF260 94 lallke 99 l +k+ Pd.00g639590.m01 101 LYNAKK 106 988876 PP

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence
MSSNTHSPCA ACKFLRRKCT QECVFAPYFP PDQPQKFANV HRVYGASNVA KILNELNAAH 60 REDAVTSLAY EAEARLRDPV YGCVGFISIL QGKLKQIQTD LYNAKKDLSA YIGPQALMIP 120 VFHPSQQTDV NASMLGISNC PPPQHGCGGG QLMQQQQQLF EAHQQELVRY NVNGMDAAAA 180 NSVTGNGFNQ MHAAAGTNGV VSAGSLGLGG GFDNNPYNHQ IQPHQAAAAA HHQHSLDYQL 240 QVQLMLQPHQ AQQSQLKSEG EES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	1e-64	LBD family protein