PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g641050.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 217aa    MW: 24826.6 Da    PI: 10.4032
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g641050.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.21.6e-314291150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  Pd.00g641050.m01 42 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSNRGRLYEYA 91
                      79***********************************************8 PP
2K-box116.42.6e-38111204698
             K-box   6 gks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                       ++  ++ea ++++qqe+akL ++i nLq++ Rh++Ge+L+s+++k+L++Le++Lek++++iRskKnell+++ie++qk+e +l+++n+ Lr+k
  Pd.00g641050.m01 111 NTGsVSEASTQYYQQEAAKLPAQIGNLQNSSRHMMGESLSSMNMKDLKNLESKLEKGINRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAK 203
                       333599*************************************************************************************99 PP

             K-box  98 l 98 
                       +
  Pd.00g641050.m01 204 V 204
                       7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MTTNERKRAK KTQKLATMAY ENKSMSLDSP QRKLGRGKIE IKRIENTTNR QVTFCKRRNG  60
LLKKAYELSV LCDAEVALIV FSNRGRLYEY ANNSVKETIE RYKKACAEST NTGSVSEAST  120
QYYQQEAAKL PAQIGNLQNS SRHMMGESLS SMNMKDLKNL ESKLEKGINR IRSKKNELLF  180
AEIEYMQKRE IDLHNNNQLL RAKVIPLSLS LSLSLPL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-99MIKC_MADS family protein