PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g645730.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 889aa    MW: 98443.7 Da    PI: 6.6276
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g645730.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.99.4e-24127228199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +
  Pd.00g645730.m01 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--W 215
                       99*****************************86555544..8************************************************..8 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                       +++ +l+++++r+
  Pd.00g645730.m01 216 NEKNQLLLGIRRA 228
                       899999****997 PP
2Auxin_resp114.11.3e-37253335183
        Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       aahaa+t+s F+++YnPras+seFv+++ k+ ka++ + +svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  Pd.00g645730.m01 253 AAHAAATNSRFTIFYNPRASPSEFVIPLTKYIKAVYhTCISVGMRFRMLFETEESSVRRYMGTITGISDLDP-RWPNSHWRSVK 335
                       79*********************************956689*******************************.********985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 889 aa     Download sequence    
MRLSSAGFSP QSQEGEKRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPQEQKDG YLPAGLGNPN  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFTQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL TKYIKAVYHT CISVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT  360
FPMYPSPFPL RLKRPWPPGL PSFHGIRDDD LGMNSQLMWL RGDNGDRGIQ SLNFPGIGVT  420
PYMQPRLDAS MIGLQTDMYQ AMAAAALQEM RAVDPSRPLP TSLLQFQQPQ SLPSRSTALM  480
HPHMVQESQS QQAFLQSVQE NHRQSQPQTQ TQSHLLQQQL QHQNSFSNQQ QLVDHQQIPS  540
AVSAMTQFSS ASQSQSPSLQ VATSLCQQQS FSDSNGNPAT STILSPLHSL MGSFPQDEPS  600
HLLNLPRTNQ LVSSGAWPSK RAAIEPLLSS AVSQCVLPHV EQLGPPQTTI SQNSISLPPF  660
PGRECSIDQE GSTDPQSHLL FGVNIESSSL LMQNGMSNLR GVGSDSDSTT MHFPPNYLST  720
TGTDFSLNPA VTPSSCIDES GFLQSPENVG HGNTLNNNFV KVYKSGSFGR SLDITKFSSY  780
HELRGELARM FGLEGELEDP VRSGWQLVFV DRENDVLLLG DDPWPEFVNS VWCIKILSPH  840
EVQQMGKRGL DLLKSVPTQR LSNNSCDAYG SRQDSRNLSG ITSVGSLEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein