PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g650310.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 413aa    MW: 45334.9 Da    PI: 6.6874
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g650310.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.1e-07178199426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       + C+ f++ G+C  Gd+C FaHg
  Pd.00g650310.m01 178 AACPEFRK-GHCAKGDSCEFAHG 199
                       78******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    
MVAEKATDVS DIQNEKAGEE IESASPLKVG EERELETPES KPHPKMMLGE PTRLHPTLQV  60
PPWDPFDDLT PTSPFSAPNP SVNVNSNAGN GDYSPLSPMF LDSLAALHRY LPSNESDSLG  120
DDPDMPMNPI SCDQFRMFEF KVRRCARGRS HDWTECPYAH PGEKARRRDP RKYHYSGAAC  180
PEFRKGHCAK GDSCEFAHGV FECWLHPARY RTQPCKDGLG CHRRVCFFAH TPEQLRVLPG  240
QSPRTHGSGA FDSYSYGSSP PSILISPPIS PPSDSPPMSP NSPQLGCNSV SELVASMRNF  300
KLAKMKMSAQ PAWGPQMGSG FCSSPRGSAL RPAFCSLPST PTRTSGRAGP GAVDLWDHPC  360
EEEPAMERVE SGRDIRARMY ARLSKENSMG RVGRVDSGMS APDVGWVSEL VSE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-117C3H family protein