PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g650340.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

HD-ZIP

Protein Properties

Length: 191aa MW: 21622.5 Da PI: 8.4994

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g650340.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.2	3.2e-19	72	126	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Le+ F+++ +++ +++++LA+kl+L rqV vWFqNrRa+ k Pd.00g650340.m01 72 RKKLRLSKEQSATLEDSFREHTTLNPKQKQDLARKLNLRPRQVEVWFQNRRARTK 126 788899***********************************************98 PP
2	HD-ZIP_I/II	123.8	8.3e-40	72	159	1	88
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rlskeq+++LE+sF+e+++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E d+e Lk+++++lkeen+rL+ke +eL+ Pd.00g650340.m01 72 RKKLRLSKEQSATLEDSFREHTTLNPKQKQDLARKLNLRPRQVEVWFQNRRARTKLKQTEADCELLKKCCETLKEENRRLHKELQELN 159 69************************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence
MSFDEACNTG LGLSLGCRPS TASKIEEAES TDLHQAVAVQ EQASSPCSGA FSSFSNSASE 60 ELYEQDHEGS PRKKLRLSKE QSATLEDSFR EHTTLNPKQK QDLARKLNLR PRQVEVWFQN 120 RRARTKLKQT EADCELLKKC CETLKEENRR LHKELQELNF QQPLSPCALL VKKSATAVTT 180 IIIMGRRRVP F

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	129	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22800.1	4e-48	HD-ZIP family protein