PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g651010.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 256aa MW: 27542 Da PI: 8.4837

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g651010.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	93.4	2.5e-29	2	102	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C++ C+l+ ++ p++q +++ +++k+FG+s +l++++a+pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++++ Pd.00g651010.m01 2 SCNGCRVLRKGCSETCILRSCLqaidsPEAQGNATLFLAKFFGRSDLLSFISAVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLSSGNWHVC 94 6*******************9999999999********************************************************* PP DUF260 89 qlkaelal 96 q+++e++l Pd.00g651010.m01 95 QSAVETVL 102 *99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence
MSCNGCRVLR KGCSETCILR SCLQAIDSPE AQGNATLFLA KFFGRSDLLS FISAVPEPQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLSSGN WHVCQSAVET VLSGGVLRPL TAVLTPSLHE 120 SSETSSRGAC TLQNLYYPPV PSAYYDEERI QPFDAGLSLK PNLAAGERGR GRGMRSSSCV 180 STAVGKRRRD TVSFSSEESV MTSTTSFERG GGLKDRKDAA FNGLPGRTSS VFRGHAATSS 240 IRYPPQADDE DKWKYV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	4e-64	LBD family protein