PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g656910.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 640aa MW: 72051 Da PI: 9.0564

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g656910.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	66.7	5.2e-21	560	609	1	50
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalp 50 +CaaCk+lrr+C++dC+l+pyfp+++p++fa vh+++Gasnv k+l++ + Pd.00g656910.m01 560 RCAACKYLRRRCPSDCILSPYFPSNDPQRFASVHRIYGASNVAKMLQQRN 609 6*********************************************9843 PP

Sequence ? help Back to Top
Protein Sequence Length: 640 aa Download sequence
MVIVLRLVIL CIFLHYRLTN PVPNAYALWL ISVICEIWFA ISWILDQFRK WLPVNRETYL 60 DRLSLRYDRE GEPSQLAAVD IFVSTVDPLK EPPMVTANTV LSILAVDYPV DKYAIEPRAP 120 EWYFTQNIDY LKDKVQPSFV KDRRAMKVRV SAVLTNGPFL LILDCDHYIN NSKALREAKC 180 FLMDPNLGKN VCYVQFPQRF DGIDRNDRYA NRNTVFFDIN LRGLDGIQGP VYVGTGCVFN 240 RTALYGYEPP VKPKHKKAGF VSSLCGGSRK KGSKSSKKGS DKKKSNKHVD PTVPIFSLED 300 IEEGVEGAGF DNEKSLLMSQ MSLEKRFGQS AVFVASTLME NGGVPQSATP ETLLKEAIHV 360 ISCGYEDKTD WGNEIGWICG SVTEDILTGF KMHARWWRSI YCMPKRPAFK GGRLKWLERF 420 AYVNTTIYPI TSIPLLMYCT LPAVCLLTNK FIIPQISNIA SIWFISLFLS IFATAHLFAV 480 VQGLLKVLAG IDTNFTVTSK ASNEDGGFAE LYMFKWTTLL IPPPTLLIIN LVGVVAGISY 540 AINSGYQPSL IWIKMNMSGR CAACKYLRRR CPSDCILSPY FPSNDPQRFA SVHRIYGASN 600 VAKMLQQRNQ IVDAVVIARI LGAALVVPIL QVNVIWGDER

Sequence ? help Back to Top

Protein Sequence Length: 640 aa Download sequence

MVIVLRLVIL CIFLHYRLTN PVPNAYALWL ISVICEIWFA ISWILDQFRK WLPVNRETYL  60
DRLSLRYDRE GEPSQLAAVD IFVSTVDPLK EPPMVTANTV LSILAVDYPV DKYAIEPRAP  120
EWYFTQNIDY LKDKVQPSFV KDRRAMKVRV SAVLTNGPFL LILDCDHYIN NSKALREAKC  180
FLMDPNLGKN VCYVQFPQRF DGIDRNDRYA NRNTVFFDIN LRGLDGIQGP VYVGTGCVFN  240
RTALYGYEPP VKPKHKKAGF VSSLCGGSRK KGSKSSKKGS DKKKSNKHVD PTVPIFSLED  300
IEEGVEGAGF DNEKSLLMSQ MSLEKRFGQS AVFVASTLME NGGVPQSATP ETLLKEAIHV  360
ISCGYEDKTD WGNEIGWICG SVTEDILTGF KMHARWWRSI YCMPKRPAFK GGRLKWLERF  420
AYVNTTIYPI TSIPLLMYCT LPAVCLLTNK FIIPQISNIA SIWFISLFLS IFATAHLFAV  480
VQGLLKVLAG IDTNFTVTSK ASNEDGGFAE LYMFKWTTLL IPPPTLLIIN LVGVVAGISY  540
AINSGYQPSL IWIKMNMSGR CAACKYLRRR CPSDCILSPY FPSNDPQRFA SVHRIYGASN  600
VAKMLQQRNQ IVDAVVIARI LGAALVVPIL QVNVIWGDER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26620.1	8e-27	LBD family protein