PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pd.00g658910.m01

Organism

Prunus domestica

Taxonomic ID

3758

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 596aa MW: 65290.5 Da PI: 9.4462

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pd.00g658910.m01	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.3e-05	93	115	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pd.00g658910.m01 93 FVCEICKKGFQRDQNLQLHRRGH 115 89*******************88 PP
2	zf-C2H2	11.8	0.00072	169	191	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Pd.00g658910.m01 169 WKCDKCSKKYAVQSDWKAHSKTC 191 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 596 aa Download sequence
MSIITGSAAG SFSSGNTGGE EVQQQQQQEL LNHANFHGSN SFLSTTPPNI NSNGTQPKQP 60 PQAKRKRNLP GTPDPSAEVV ALSPKTLMAT NRFVCEICKK GFQRDQNLQL HRRGHNLPWK 120 LKQRTSTEII KRVYVCPEPS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV 180 QSDWKAHSKT CGTREYKCDC GTIFSRRDSF ITHRAFCDAI AEENNTANQG VLMSNINMGA 240 PILQVPQQPL PMSSKPLNML PRSLNNNNNT SSSSPSPLLF ELSRGHGLIP SSSGHLSATE 300 LLQKAAQMGA TMSSTSPSPS GTTITSMAPS TYGTTTAGGY NVNPFMQHRD HHNVNVGPQL 360 ENSFFGANNY AQMGMYGGLL FDPHQNNGLL KNMEQDNNGN SSKLGLRGTN EGTAEFIYPA 420 SWVGDQTLLY RAAEKKEFER SLDPPPLNIN TKSRADTGRR GNVSEPVVAF GPPASTGELN 480 VSVIVSPVPL DFKIEAFGGP KEVGEAVVRT VAGSGKRPDV RGTLIRTNLR EDSLKNIKYY 540 ELEFRVESPL FHRHNIAVCC ARGGRLFTLN AQAPESAWPE VKSDFHRIAE SFSLTS

Sequence ? help Back to Top

Protein Sequence Length: 596 aa Download sequence

MSIITGSAAG SFSSGNTGGE EVQQQQQQEL LNHANFHGSN SFLSTTPPNI NSNGTQPKQP  60
PQAKRKRNLP GTPDPSAEVV ALSPKTLMAT NRFVCEICKK GFQRDQNLQL HRRGHNLPWK  120
LKQRTSTEII KRVYVCPEPS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV  180
QSDWKAHSKT CGTREYKCDC GTIFSRRDSF ITHRAFCDAI AEENNTANQG VLMSNINMGA  240
PILQVPQQPL PMSSKPLNML PRSLNNNNNT SSSSPSPLLF ELSRGHGLIP SSSGHLSATE  300
LLQKAAQMGA TMSSTSPSPS GTTITSMAPS TYGTTTAGGY NVNPFMQHRD HHNVNVGPQL  360
ENSFFGANNY AQMGMYGGLL FDPHQNNGLL KNMEQDNNGN SSKLGLRGTN EGTAEFIYPA  420
SWVGDQTLLY RAAEKKEFER SLDPPPLNIN TKSRADTGRR GNVSEPVVAF GPPASTGELN  480
VSVIVSPVPL DFKIEAFGGP KEVGEAVVRT VAGSGKRPDV RGTLIRTNLR EDSLKNIKYY  540
ELEFRVESPL FHRHNIAVCC ARGGRLFTLN AQAPESAWPE VKSDFHRIAE SFSLTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	2e-99	C2H2 family protein