PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pd.00g660520.m01
Organism
Prunus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 466aa    MW: 53504.6 Da    PI: 5.7082
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pd.00g660520.m01genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix461.4e-1476134265
          trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 
                       W+++e laL+++r+ m++++ +       We+vs+k++e gf+rs+++Ckek+e+ ++ + +i+
  Pd.00g660520.m01  76 WSNDELLALLRIRSTMDNWFPEF-----TWEHVSRKLAELGFKRSAEKCKEKFEEESRCFNNIN 134
                       ********************998.....9**************************999998876 PP
2trihelix79.74.3e-253203812486
          trihelix  24 gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       g  k+plWe++s+ m e+g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql 
  Pd.00g660520.m01 320 GVVKAPLWERISQGMLEKGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCPYFHQLS 381
                       44799******************************************8.9999********95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    
MAQEQTKIAL FHTLGSCLLE QINVTVPAGV QLHRQSATPK NHEEKKESNL VSINNNLEIE  60
RERSSSISQV PISDPWSNDE LLALLRIRST MDNWFPEFTW EHVSRKLAEL GFKRSAEKCK  120
EKFEEESRCF NNINFTKNYR FLSDLEELCH GGNDDQNPDQ AAAGAENKNQ QKLEKPSNNE  180
GDEDNRCQIL DEDSTRNETV VGSKEFDDHD KEKEVVERTK SNVVRKRKRQ RRFEMLKGFC  240
EDIVNRMMAQ QEEMHSKLLE DMVKRSEEKL AREEAWKKQE MDRMNKELEI MAHEQAIAGD  300
RQATIINLFN NGSADQDKNG VVKAPLWERI SQGMLEKGYK RSAKRCKEKW ENINKYFRKT  360
KDVNKKRSLD SRTCPYFHQL STLYNQGILV PPSDHIQGPD HQTSSASPEN QSLASPVVPQ  420
TGLDSSDQGR CSADADDDLS KHNIIGEGEK NNTVQPVPAA AFDFEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226231KRKRQR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.14e-48Trihelix family protein